PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g018827m
Common NameCISIN_1g018827mg, LOC102616650
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family E2F/DP
Protein Properties Length: 351aa    MW: 38298.7 Da    PI: 7.2754
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g018827mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.21.2e-2796178271
            E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  orange1.1g018827m  96 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpsnslatpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 178
                        689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094043.1E-1322350IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.6E-4692183IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.9E-3595178IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.1E-2597178IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.77E-2198179IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.16E-45183286IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440746.8E-43184297No hitNo description
SMARTSM011386.5E-75185348IPR014889Transcription factor DP, C-terminal
PfamPF087819.6E-42186298IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVTGNNSHQE DGDRQQPAAK GGGATRSWGT TVSGQSVSTS GSVGSPSQSM ATPASDSTFL  60
RLNHLDIHGD DAGSQGAVVG GKKKKRGQRA GGGDKSGRGL RQFSMKVCEK VESKGRTTYN  120
EVADELVAEF ADPSNSLATP DQQQYDEKNI RRRVYDALNV LMAMDIISKD KKEIQWKGLP  180
RTSLNDIEEL KAERLGLRNR IEKKTAYLQE LEDQFVGLQN LIQRNERLYS SGNAPSGGVA  240
LPFILVQTRP HATVEVEISE DMQLVHFDFN STPFKLHDDN SVLKAMKFCE RQQSDDMAQS  300
FPADDGEGSS MAGVYQPPQL LPPPRANNSN RPPTSPPVPG ILKARVKHEH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3689183193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428365.10.0transcription factor-like protein DPB isoform X2
RefseqXP_006491709.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-161DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A067E7Y30.0A0A067E7Y3_CITSI; Uncharacterized protein
TrEMBLV4SRN50.0V4SRN5_9ROSI; Uncharacterized protein
STRINGXP_006491709.10.0(Citrus sinensis)
STRINGXP_006428365.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-137Transcription factor DP