PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g018703m
Common NameCISIN_1g015861mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 352aa    MW: 39408.7 Da    PI: 8.0292
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g018703mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.6e-06326226
                       -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                       k++lC+ffa  G C  G+ C F+H+
  orange1.1g018703m  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                       99****6666.*************5 PP
2zf-CCCH25.32.7e-083454526
                       --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                       +C ++++ G+C+yG+rC++ H+
  orange1.1g018703m 34 ICTYYQK-GFCSYGSRCRYEHV 54
                       7******.***********997 PP
3zf-CCCH19.61.7e-06131153326
                        S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        +++C+ fa+ G C++G++C+ +Hg
  orange1.1g018703m 131 RSICS-FAAAGNCPRGEKCPHIHG 153
                        67899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.671128IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.772956IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-53453IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.178128155IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021129154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4133154IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.97E-13186261No hitNo description
Gene3DG3DSA:3.30.40.109.6E-10192256IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00274196256No hitNo description
PROSITE profilePS5008912.238197255IPR001841Zinc finger, RING-type
SMARTSM001843.2E-7197254IPR001841Zinc finger, RING-type
PfamPF000974.1E-7197254IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180221230IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010314.061284313IPR000571Zinc finger, CCCH-type
SMARTSM003560.21284312IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQK GFCSYGSRCR YEHVKPSRSE  60
SAASSSSSVS HPSRATSSGI TKVPGVMPEL SALSRPFLPP NKTAWNPESV CNDSLENDEV  120
DEPRNLKPAD RSICSFAAAG NCPRGEKCPH IHGDTCPTCG KQCLHPFRPE EREEHMKSCE  180
KKQKHLEALR RSQEIECSVC LDRVLSKPTA AERKFGLLSE CDHPFCISCI RNWRSSSPTS  240
GMDVNTALRA CPICRKLSYF VIPSVIWYYT PEEKQEIIDS YKSKLKSIDC KHFNFGNGNC  300
PFGTSCFYKH AYTDGRLEEV VLRHLGSDDG STVIAKDIRF TNLSQLTVTL V*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.116630.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015387312.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X6
RefseqXP_015387313.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X6
SwissprotE0X9N41e-176C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A067GUT20.0A0A067GUT2_CITSI; Uncharacterized protein
STRINGXP_006482894.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-160C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]