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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g017879m | ||||||||
Common Name | CISIN_1g0118532mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 365aa MW: 39387.3 Da PI: 8.396 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.5 | 8.4e-12 | 43 | 68 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ rtG+C yG+rC+F+H++ orange1.1g017879m 43 DEADCIHYVRTGFCAYGSRCRFNHPR 68 6799********************96 PP | |||||||
2 | zf-CCCH | 41 | 3.3e-13 | 90 | 114 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCkyG++Ck++H++ orange1.1g017879m 90 QPVCQYYMRTGTCKYGASCKYHHPR 114 689********************96 PP | |||||||
3 | zf-CCCH | 37.1 | 5.2e-12 | 135 | 160 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++t +Ck+G++CkF+H++ orange1.1g017879m 135 GEKECSYYMKTRQCKFGATCKFHHPQ 160 7899********************97 PP | |||||||
4 | zf-CCCH | 38.7 | 1.7e-12 | 303 | 328 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++++tG Ck+G++C+F+H++ orange1.1g017879m 303 GQQECQYYMKTGDCKFGSSCRFHHPR 328 6789********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.0E-4 | 41 | 68 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.389 | 41 | 69 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.2E-9 | 43 | 68 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 44 | 69 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-5 | 47 | 68 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.901 | 87 | 115 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-7 | 87 | 114 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.8E-11 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.33E-7 | 90 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-6 | 92 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.939 | 133 | 161 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0018 | 133 | 160 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 135 | 160 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-6 | 135 | 161 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.92 | 301 | 329 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.3E-6 | 301 | 328 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-9 | 303 | 328 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 304 | 329 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-6 | 307 | 329 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MERHGRVSEG SQSDPSPEWT APGTETGPEG LGVGAESYPE RPDEADCIHY VRTGFCAYGS 60 RCRFNHPRDR GSVMGAARAG GGEFPERVGQ PVCQYYMRTG TCKYGASCKY HHPRQGAGSV 120 SNVSLNYYGY PLRPGEKECS YYMKTRQCKF GATCKFHHPQ PAGVPAPTPS PAPQVAAVPT 180 PVPAPALYPP LQSPSVPSAQ QYGVVVARPP LLHGSYVQGP YGPVLVSPSM FSLQGWSPYA 240 TSLNPISSPG TGTQSSVGSS SIYGITQLSA SAPAYTGTYQ SLPSSVGPSS SSQKEHPFPE 300 RPGQQECQYY MKTGDCKFGS SCRFHHPREL IVPKMDVTLS PFGLPLRPVS FFWHLLLHYY 360 ALHE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006419655.1 | 0.0 | zinc finger CCCH domain-containing protein 58 isoform X1 | ||||
Refseq | XP_006489144.1 | 0.0 | zinc finger CCCH domain-containing protein 58 isoform X1 | ||||
Swissprot | Q6NPN3 | 1e-137 | C3H58_ARATH; Zinc finger CCCH domain-containing protein 58 | ||||
TrEMBL | A0A067G675 | 0.0 | A0A067G675_CITSI; Uncharacterized protein | ||||
STRING | XP_006489144.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006419655.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-117 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g017879m |
Publications ? help Back to Top | |||
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