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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
orange1.1g017854m |
| Common Name | CISIN_1g017854mg, LOC102614981 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
NAC |
| Protein Properties |
Length: 366aa MW: 40389.3 Da PI: 8.7381 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g017854m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 172.9 | 9.8e-54 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++
orange1.1g017854m 15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-AIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPI 105
79****************************.88***************8888999************************************* PP
NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
l++ ++++vg+kk Lvfy g+ pkg kt+W+mheyr+
orange1.1g017854m 106 LTSkGNQKVGVKKALVFYGGKPPKGIKTNWIMHEYRI 142
99867788***************************96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 366 aa
Download sequence Send
to blast |
MESTDSSTSS QHPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVAIIAEV DLYKFDPWEL 60
PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSKG NQKVGVKKAL 120
VFYGGKPPKG IKTNWIMHEY RIVDNISGTK PPPHQLPADL ANKKHSLRLD DWVLCRIYKK 180
NNAQRPMERD RDEDSFEGMC VTLPPNQNPK PFPAPPGRST LSYGSIFEQD DHFFEGMLSS 240
AGEGIHQNSC VSSSKPPPNT MSMSLVSPTS NSIKRAIPPQ FWNEASGSMA SSPSRKSFLG 300
DLNSGSGTAT DHEHDHDSNS FVSLLNQLPQ SAQFNPNTSA LLGSLGDATA TLRQQFQLPA 360
MNWNS*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-73 | 15 | 183 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-73 | 15 | 183 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-73 | 15 | 183 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-73 | 15 | 183 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-73 | 15 | 183 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_B | 3e-73 | 15 | 183 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_C | 3e-73 | 15 | 183 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_D | 3e-73 | 15 | 183 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_A | 3e-73 | 15 | 183 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_B | 3e-73 | 15 | 183 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_C | 3e-73 | 15 | 183 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_D | 3e-73 | 15 | 183 | 20 | 171 | NAC domain-containing protein 19 |
| 4dul_A | 3e-73 | 15 | 183 | 17 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 3e-73 | 15 | 183 | 17 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}. |
| Uniprot | TISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
