PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g017825m
Common NameCISIN_1g017825mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YA
Protein Properties Length: 366aa    MW: 39865.4 Da    PI: 9.7451
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g017825mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.34.5e-32177233158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        +ep+YVNaKQy++Il+RRq Rak+e e+kl +k rkpylheSRh hA+rR+Rg+gGrF
  orange1.1g017825m 177 EEPVYVNAKQYHGILRRRQLRAKAELERKL-IKVRKPYLHESRHLHAMRRARGCGGRF 233
                        69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-36175236IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.491176236IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.1E-27178233IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-23179201IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860181201IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.3E-23210233IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MLRSMHQNKS SNSSGPEANS NNSFTISSQP WWRGVGHDST SRAMLQGGIG NISSPREPIN  60
GVLVAKTSKS QVNSGMDGGA DATKEMLMSV ASQADGKFGG QQPSQHSVSL MHPQFSEYLT  120
QPSQLELVGH SIACASYPYS DSYYGGAVPA YGQQALVHPQ SMGVHSARMA LPLEMAEEPV  180
YVNAKQYHGI LRRRQLRAKA ELERKLIKVR KPYLHESRHL HAMRRARGCG GRFVNTKKLD  240
SQTSNGTVTN GTSLNVAVST LPPNSSKSES VATNYSRGTA DLSTGCREVT EPQVHKMQQQ  300
QRCSNGNGQT YYEGNGNGCY SHHQGFQLFK CHSLPDNKVE EGDFSGQQSG RIVENRAQHR  360
ALTIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20177241266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024044821.10.0nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_024044824.10.0nuclear transcription factor Y subunit A-1 isoform X1
TrEMBLA0A067ER940.0A0A067ER94_CITSI; Uncharacterized protein
STRINGXP_006489920.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156021015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.42e-52nuclear factor Y, subunit A1