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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g017825m | ||||||||
Common Name | CISIN_1g017825mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NF-YA | ||||||||
Protein Properties | Length: 366aa MW: 39865.4 Da PI: 9.7451 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.3 | 4.5e-32 | 177 | 233 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+e e+kl +k rkpylheSRh hA+rR+Rg+gGrF orange1.1g017825m 177 EEPVYVNAKQYHGILRRRQLRAKAELERKL-IKVRKPYLHESRHLHAMRRARGCGGRF 233 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.6E-36 | 175 | 236 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.491 | 176 | 236 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.1E-27 | 178 | 233 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.3E-23 | 179 | 201 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 181 | 201 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.3E-23 | 210 | 233 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MLRSMHQNKS SNSSGPEANS NNSFTISSQP WWRGVGHDST SRAMLQGGIG NISSPREPIN 60 GVLVAKTSKS QVNSGMDGGA DATKEMLMSV ASQADGKFGG QQPSQHSVSL MHPQFSEYLT 120 QPSQLELVGH SIACASYPYS DSYYGGAVPA YGQQALVHPQ SMGVHSARMA LPLEMAEEPV 180 YVNAKQYHGI LRRRQLRAKA ELERKLIKVR KPYLHESRHL HAMRRARGCG GRFVNTKKLD 240 SQTSNGTVTN GTSLNVAVST LPPNSSKSES VATNYSRGTA DLSTGCREVT EPQVHKMQQQ 300 QRCSNGNGQT YYEGNGNGCY SHHQGFQLFK CHSLPDNKVE EGDFSGQQSG RIVENRAQHR 360 ALTIK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-20 | 177 | 241 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024044821.1 | 0.0 | nuclear transcription factor Y subunit A-1 isoform X1 | ||||
Refseq | XP_024044824.1 | 0.0 | nuclear transcription factor Y subunit A-1 isoform X1 | ||||
TrEMBL | A0A067ER94 | 0.0 | A0A067ER94_CITSI; Uncharacterized protein | ||||
STRING | XP_006489920.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15602 | 10 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.4 | 2e-52 | nuclear factor Y, subunit A1 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g017825m |