PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g016735m | ||||||||
Common Name | CISIN_1g011169mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Dof | ||||||||
Protein Properties | Length: 384aa MW: 41268.3 Da PI: 6.627 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 104.1 | 7.9e-33 | 1 | 48 | 14 | 61 |
zf-Dof 14 tntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ orange1.1g016735m 1 MDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHF 48 69********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 24.344 | 1 | 47 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-21 | 1 | 46 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.2E-25 | 1 | 47 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MDTKFCYFNN YNVNQPRHFC KNCQRYWTAG GTMRNVPVGA GRRKNKHFAS QYRQILVSSD 60 GVPVTGLETP NSANQQLMLC GDSATTFRPS TGNGTVLKFG PETPLCESME NVLNLRDQKR 120 SVEICTVTCV ENKEEPSSSG SPVTASSIRG NELPESVMQK EQVMMTGSCN ELNMQQSMHC 180 YPVSPWGVPW NPNNVASMEA AQNPSDRVCV PNGSNPGPVQ WCPTTVLAVP GFCAPNIPLQ 240 FVPASYWGMG VWAAGAGNIP LTGSNGCLSP SSSTSNNSCC SGNGSPTLGK HSRDPNLTDE 300 GQSEKCVLVP KTLRIDDPDE ASRSPIWATL GFKPDQKDLK SGGAIFKDFE TKKGGKADVL 360 DGAEILESNP AALSRSHTFQ EST* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006443525.1 | 0.0 | cyclic dof factor 3 | ||||
Refseq | XP_006479196.1 | 0.0 | cyclic dof factor 3-like | ||||
TrEMBL | A0A067FF52 | 0.0 | A0A067FF52_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A067FF98 | 0.0 | A0A067FF98_CITSI; Uncharacterized protein | ||||
STRING | XP_006479196.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006443525.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 6e-33 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g016735m |