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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
orange1.1g016692m |
Common Name | CISIN_1g016692mg, LOC102606748 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
HSF |
Protein Properties |
Length: 385aa MW: 42825.1 Da PI: 8.0737 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g016692m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 113.9 | 1e-35 | 25 | 117 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93
Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fkkg+k+l
orange1.1g016692m 25 FLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHL 107
9*****************************************************************99.........*************** PP
XXXXXXXXXX CS
HSF_DNA-bind 94 lekikrkkse 103
l++i+r+k++
orange1.1g016692m 108 LCEIHRRKTA 117
*******986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0008356 | Biological Process | asymmetric cell division |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0042802 | Molecular Function | identical protein binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 385 aa
Download sequence Send
to blast |
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPTTDH VVSWGEDDTT FVVWRPPEFA 60 RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPQ 120 VAINHHHHHH QHPHSHSPVL VNGPSFFPFP NRVSISPSDS DEHVNNWCDS PPRGGKGTGV 180 SAVMSSGAGC GGGYNNNNNN INLNTSVTAL SEDNERLRRS NNMLMSELAH MRKLYNDIIY 240 FVQNHVKPVT PSNSYPPSLL LCNTTPSAAA AAPMCANTTP LVQKPLNQLL GYYPTNGTNP 300 KQATHHQAHV LNSPTATSQS SLTILEEPNS NSCKTKLFGV PLQSKKRVHP EYASNYPANT 360 ETNKARLVMD KDDLGLNLMP PSTC*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
2ldu_A | 3e-21 | 21 | 117 | 17 | 123 | Heat shock factor protein 1 |
5d5u_B | 2e-21 | 21 | 116 | 26 | 131 | Heat shock factor protein 1 |
5d5v_B | 2e-21 | 21 | 116 | 26 | 131 | Heat shock factor protein 1 |
5d5v_D | 2e-21 | 21 | 116 | 26 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |