PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bZIP

Protein Properties

Length: 388aa MW: 41300.4 Da PI: 8.6319

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g016555m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	69.8	4.4e-22	278	340	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae eeL +kv++L eN +Lk+e+++l+++++kl++e+ orange1.1g016555m 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQEN 340 89***********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	2.8E-34	1	94	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	5.8E-24	127	259	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.6E-18	272	338	No hit	No description
Pfam	PF00170	4.5E-20	278	340	IPR004827	Basic-leucine zipper domain
SMART	SM00338	3.2E-20	278	342	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.622	280	343	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.19E-10	281	338	No hit	No description
CDD	cd14702	2.58E-21	283	331	No hit	No description
PROSITE pattern	PS00036	0	285	300	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005829	Cellular Component	cytosol
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MGNNEDGKSF KSEKPSSPPP SDQGNIHMYT DWAAMQAYYG PRVAIPPYYN SPIASGHAPQ 60 PYMWGPAQPM MPPYGAPYAA IYSTGGVYAH PAVPLGSHAH NHGVPTSPAA VTPLNTEAPT 120 KSSGNADRGL AKKLKGLDGL AMSIGNASAE SAEGGAEQRP SQSEADGSTD GSDGNTVRAG 180 QSRKKRSREG TPIAGGDGKT DIQSTPVPVG VNATPDKVLA TAVAPTSVSG KPVGPVLSPG 240 MPTKLELRNA PGMNVKASPT SVPQPCAVLP PETWIQNERE LKRERRKQSN RESARRSRLR 300 KQAEAEELSR KVDSLIDENA SLKSEINQLS ENSEKLRQEN AALLVCHINV IIFWTVSLFS 360 NEANRSCVFV CECFCCNLLI GLTYRKN*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MGNNEDGKSF KSEKPSSPPP SDQGNIHMYT DWAAMQAYYG PRVAIPPYYN SPIASGHAPQ  60
PYMWGPAQPM MPPYGAPYAA IYSTGGVYAH PAVPLGSHAH NHGVPTSPAA VTPLNTEAPT  120
KSSGNADRGL AKKLKGLDGL AMSIGNASAE SAEGGAEQRP SQSEADGSTD GSDGNTVRAG  180
QSRKKRSREG TPIAGGDGKT DIQSTPVPVG VNATPDKVLA TAVAPTSVSG KPVGPVLSPG  240
MPTKLELRNA PGMNVKASPT SVPQPCAVLP PETWIQNERE LKRERRKQSN RESARRSRLR  300
KQAEAEELSR KVDSLIDENA SLKSEINQLS ENSEKLRQEN AALLVCHINV IIFWTVSLFS  360
NEANRSCVFV CECFCCNLLI GLTYRKN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	294	300	RRSRLRK
2	294	301	RRSRLRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.11638	0.0	callus\| fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00318	DAP	Transfer from AT2G46270	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006444899.1	0.0	common plant regulatory factor 1 isoform X1
Refseq	XP_006491223.1	0.0	common plant regulatory factor 1 isoform X1
Refseq	XP_006491224.1	0.0	common plant regulatory factor 1 isoform X1
Swissprot	Q99089	1e-114	CPRF1_PETCR; Common plant regulatory factor 1
TrEMBL	A0A067H303	0.0	A0A067H303_CITSI; Uncharacterized protein
STRING	XP_006491223.1	0.0	(Citrus sinensis)
STRING	XP_006444896.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46270.1	2e-79	G-box binding factor 3

Link Out ? help Back to Top
Phytozome	orange1.1g016555m

Publications ? help Back to Top
Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115] Feldbrügge M,Hahlbrock K,Weisshaar B The transcriptional regulator CPRF1: expression analysis and gene structure. Mol. Gen. Genet., 1996. 251(6): p. 619-27 [PMID:8757392]