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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g016319m | ||||||||
Common Name | CISIN_1g016319mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Trihelix | ||||||||
Protein Properties | Length: 392aa MW: 43753.4 Da PI: 7.6217 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.9 | 4.6e-08 | 296 | 354 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.........tWktIartmg...kgRtlkqcksrwqky 47 r++W +eE ++l++ +l ++ Wk I+ ++ +Rt+ qcksrw ++ orange1.1g016319m 296 RNKWRPEEVKKLIKMRGELHSKfqvvkgrmaLWKEISTHLAnegFNRTPSQCKSRWSSL 354 799*****************************************99**********876 PP | |||||||
2 | trihelix | 69 | 9.4e-22 | 298 | 377 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W +ev++Li++r e++++++ k +++lW+e+s +++ +gf+r+p qCk++w++l ++y++ k g+++ +++pyf++++ orange1.1g016319m 298 KWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEESKSGNSQ------KSWPYFEEMN 377 7*******************************************************************98......46*******7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-10 | 291 | 357 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.344 | 291 | 359 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-6 | 292 | 363 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-6 | 295 | 357 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 5.6E-21 | 296 | 379 | No hit | No description |
CDD | cd12203 | 4.78E-22 | 297 | 362 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0060918 | Biological Process | auxin transport | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MLGVSHLRNR RVLSNGFISL GKENLQLMYS DGDKAFGTST ELCVDERLRI ASDGIIVVSM 60 EILRPQHTDG QSGYSLKGKI RITTRCLWLD KGKLLDALHK AAHAALSSCP VNCPLAHVEK 120 TVSEVLRKVV RKYSSKRPEV IAVAMENPAA VLSDELNARL SGNSHVGFGM PALRKMVDRH 180 PKISQLNKTQ AEGDGRQQNL QVDGIEVEEL PEETTTTSSS DHGERLSLDS EDSDEFWKSF 240 VAPASPINSL VKGNNVLIPQ EEQQMSELEE DGTEISDNDS LERSSSQPKP SKGVRRNKWR 300 PEEVKKLIKM RGELHSKFQV VKGRMALWKE ISTHLANEGF NRTPSQCKSR WSSLLQKYEE 360 SKSGNSQKSW PYFEEMNKIF SDSDSEAMAT K* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.5960 | 0.0 | callus| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During the early stages of embryo development, first observed at the transition stage. In the heart and torpedo stages, predominantly present in the upper part of embryos. In seedlings, strongly expressed in shoot meristems, hypocotyls, in the vascular bundles of cotyledons, and in the veins of mature leaves. In reproductive organs, detected in inflorescences, especially in sepals, filaments, and stigmas, as well as in mature siliques and seeds. {ECO:0000269|PubMed:25871650}. | |||||
Uniprot | TISSUE SPECIFICITY: Moslty expressed in inflorescences, seedlings, leaves, flowers and flower buds, and, to a lower extent, in stems, siliques and roots. {ECO:0000269|PubMed:25871650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:25871650}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006477011.1 | 0.0 | uncharacterized protein LOC102606767 isoform X2 | ||||
Swissprot | Q84W56 | 1e-137 | RNJ_ARATH; Ribonuclease J | ||||
TrEMBL | A0A067D4N2 | 0.0 | A0A067D4N2_CITSI; Uncharacterized protein | ||||
STRING | XP_006477010.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 1e-130 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g016319m |
Publications ? help Back to Top | |||
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