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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
orange1.1g015940m |
Common Name | CISIN_1g015940mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
Trihelix |
Protein Properties |
Length: 399aa MW: 44906.4 Da PI: 6.0849 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g015940m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 88.4 | 8.4e-28 | 81 | 162 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W ++e++ Li++rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk+k+++++ s +++y+++++
orange1.1g015940m 81 WVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGS---GSAKMSYYKEID 162
********************************************************************84...556899***997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0042802 | Molecular Function | identical protein binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 399 aa
Download sequence Send
to blast |
MYLSEKPRPY LTEKPRPIDY YKDEAVAAAA AAAAAASSRD MIMEVAAASN GELQPQQMIL 60 ADSSGGEDHE VRAPKKRAET WVQDETRILI AFRREMDGLF NTSKSNKHLW EQISAKMREK 120 GFDRSPTMCT DKWRNLLKEF KKTKHQDRGS GSAKMSYYKE IDEILKERSK NAQYKATSVA 180 NSANKVDTFM QFSDKGFDDT SISFGPVEAT GRPTLNLERR LDHDGHPLAI TTADAVAAAG 240 VPPWNWRDPP PGNGNLCGEG QSFGGKVISV KCGDYTRRIG IDGTPDAIKE AIKSAFGIRT 300 KRAFWLEDED QIVRCIDRDM PVGNYTLHLD EGLTIKVCLY DESDHISVHT EDKTFYTEED 360 YREFLARHGW TCLREFDGYR NVDNMDDLRP GAMYRGVT*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |