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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
orange1.1g015878m |
Common Name | CISIN_1g015878mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
E2F/DP |
Protein Properties |
Length: 400aa MW: 44649.7 Da PI: 5.1119 |
Description |
E2F/DP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g015878m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | E2F_TDP | 85.2 | 5.1e-27 | 128 | 193 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
r+++sL+llt+kf++l++++++g+++ln a+ L +v ++RRiYDi+NVLe+++liek++kn+irwkg
orange1.1g015878m 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVL---EV--QKRRIYDITNVLEGIGLIEKTSKNHIRWKG 193
6899******************************...99..****************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0000902 | Biological Process | cell morphogenesis |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0042023 | Biological Process | DNA endoreduplication |
GO:0051782 | Biological Process | negative regulation of cell division |
GO:0005667 | Cellular Component | transcription factor complex |
GO:0005730 | Cellular Component | nucleolus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 400 aa
Download sequence Send
to blast |
MKSSPSTTSL GANRNYHSLL GKIPLSSNQN NTLNVNSNST DIDICNKIED THSAFSRLEL 60 KQTNELANHA AQNIARRDKV VNAPSLEPES CASGKSNRKL KGLKSTKSGT QGSNADAPNG 120 LNLSNGCRYD SSLGLLTRKF INLIQEAKDG TLDLNRTAEV LEVQKRRIYD ITNVLEGIGL 180 IEKTSKNHIR WKGSDSLGTS KLDDQVARLK AEIESLHAEE CRIDDSIREK QELIRTLEEN 240 ENHQKYMFLT EEDIASLPCF QNQTLIAIKA PQASYIEVPD PDEDISFLKR QYKMIIRSTT 300 GPIDVYLLSK YQSEGKDITL QQANSANPST WNYEPCGVPN FRLSLEHEDN QKRSSDTFSL 360 MSSEAASGIQ KIVPSDCDID DDYWFRSDPE VSITDLWNN*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Not detected at the G1/S transition, but increases during the progression into S phase and peaks after the passage into G2. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:12468727}. |
Uniprot | TISSUE SPECIFICITY: Expressed in meristematic areas, vascular tissues, apical part of the roots, cotyledons, upper region of the hypocotyls, trichomes, young flower buds and pollen grains. {ECO:0000269|PubMed:12468727, ECO:0000269|PubMed:16920782}. |
Functional Description ? help
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Source |
Description |
UniProt | Involved in transcriptional repression. May act by repressing E2F-regulated genes in mature differentiated cells, but is not an antagonist of E2FA. Restricts cell division and is involved in the coordination between cell proliferation and endoreduplication during development. May play a role during the transition from skotomorphogenesis to photomorphogenesis. Regulated by phosphorylation-dependent proteolysis via the protein-ubiquitin ligase SCF(SKP2A) complex. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12468727, ECO:0000269|PubMed:16920782, ECO:0000269|PubMed:19662336}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Down-regulated by light. {ECO:0000269|PubMed:12468727, ECO:0000269|PubMed:18424613}. |