PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g015846m
Common NameCISIN_1g015846mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 400aa    MW: 44600.5 Da    PI: 10.0257
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g015846mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75e-17321373256
                AP2   2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                        +y+GVr ++ rg++ AeIrd +   g   +r++lg+f tae+Aa a+++a+ +++g+
  orange1.1g015846m 321 RYRGVRLRP-RGKYGAEIRDqF---GgGGARIWLGTFETAEDAALAYDRAAYRMRGP 373
                        7********.8*********77...3345**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508089.1491360IPR003656Zinc finger, BED-type
SMARTSM006142.4E-121364IPR003656Zinc finger, BED-type
SuperFamilySSF576672.08E-81666No hitNo description
PfamPF028923.0E-51661IPR003656Zinc finger, BED-type
PROSITE profilePS5080810.385131187IPR003656Zinc finger, BED-type
SMARTSM006142.0E-13131182IPR003656Zinc finger, BED-type
PfamPF028928.6E-7134179IPR003656Zinc finger, BED-type
SuperFamilySSF576678.33E-9134183No hitNo description
SMARTSM003801.9E-31321386IPR001471AP2/ERF domain
PROSITE profilePS5103221.008321380IPR001471AP2/ERF domain
PfamPF008471.3E-10321372IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-19321381IPR016177DNA-binding domain
CDDcd000182.96E-27321380No hitNo description
Gene3DG3DSA:3.30.730.103.6E-26321380IPR001471AP2/ERF domain
PRINTSPR003672.8E-8322333IPR001471AP2/ERF domain
PRINTSPR003672.8E-8346362IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MVRSEQNENK RRKLKSKVWD EFTKYKGEDG TDWAICSLCK KEFDGSSKKG TTHLKNHLDR  60
CRAKIKFKGG SGDTGKSIKT RDLADINEKS VIDLIKNSFD AKGMTTFQVN QEEKESGIVA  120
RNQQNEKKGK KLKSKVWDVF TKYKGEDGMD WAKCSICEKE FDGSSKKGTT HLKNHLQRCR  180
ANYKRKEAGT GGDDDKSVKT MPIVIKEKSV KDSFDAVPEA SRCHLLGELE SELSVSTSSN  240
WTHSRMSSSF SRLYPCLADN WANLPLVEDD SEDIVVYNLL RDALTVGMGP TAAARRSSPG  300
APAVPQADQS ATALVPGEGR RYRGVRLRPR GKYGAEIRDQ FGGGGARIWL GTFETAEDAA  360
LAYDRAAYRM RGPRAHLNFP LLPLVSREPE PVRIRARKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-23318381264ATERF1
3gcc_A1e-23318381264ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024043253.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A067EHU30.0A0A067EHU3_CITSI; Uncharacterized protein
STRINGXP_006478768.11e-125(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-21ethylene-responsive element binding factor 13