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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
orange1.1g015827m |
| Common Name | CISIN_1g015827mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
NAC |
| Protein Properties |
Length: 400aa MW: 45116.9 Da PI: 6.5157 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g015827m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 168.5 | 2.3e-52 | 14 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
+ pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLp + ++a+ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++
orange1.1g015827m 14 MLPGFRFHPTDEELVGFYLKRKIQHRPLPI-ELIKQVDIYKYDPWDLPkELATAGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRP 104
579***************************.89***************445566889*********************************** PP
NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
++s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl
orange1.1g015827m 105 IYSSdGTKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 142
***956667***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 400 aa
Download sequence Send
to blast |
MDDKNEIDKI DDVMLPGFRF HPTDEELVGF YLKRKIQHRP LPIELIKQVD IYKYDPWDLP 60
KELATAGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSDG TKCIGLKKSL 120
VFYRGRAAKG IKTDWMMHEF RLPSLTYSAP QKKLLDKTIP PNDAWAICRI FKKTNSMAQR 180
ALSHSWISPF PETAASDILN QGARCTQFSS ENVSCTTEIG SVIQLCGNND LQQASTTSFS 240
AFDIPTYKPL YPPLYKPSLP PASTGDLRNN FMFLPPEFSG PNECTNDAPS MLPNTAIFEN 300
IIKGSENNIE VEGQQQQSRG FSISVPQDMQ GNITMEEDET AGSRKNPNDN NNWGTIRSVG 360
FPFSLPLNMP DAWKSNLPWD SPPCTSEMST TYSTNNCYT*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 5e-51 | 5 | 176 | 7 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-51 | 5 | 176 | 7 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-51 | 5 | 176 | 7 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-51 | 5 | 176 | 7 | 168 | NO APICAL MERISTEM PROTEIN |
| 3ulx_A | 7e-51 | 1 | 176 | 1 | 171 | Stress-induced transcription factor NAC1 |
| 4dul_A | 5e-51 | 5 | 176 | 7 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 5e-51 | 5 | 176 | 7 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
