PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g015337m | ||||||||
Common Name | CISIN_1g015337mg, LOC102625251 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 409aa MW: 45947 Da PI: 7.4038 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36 | 1.3e-11 | 342 | 387 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + a++L +Av+Y+k+Lq orange1.1g015337m 342 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVDYVKELQ 387 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.939 | 336 | 386 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-15 | 339 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.79E-11 | 340 | 391 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-14 | 341 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-12 | 342 | 392 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-8 | 342 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MESDLQQHRH HFLHDHQIQH HQKQLNSGLT RYQSAPSSYF SSFLDKDAFE DFLMRPSSPE 60 TERIFARFLS NSAGNTDNTE NTSNSIIPEQ KIIQSDQQQQ QQQLMQLQQQ QQQQQQQQQQ 120 QQSYYQTQPP QPQLQQQNFQ SQNVGMDRFS TQPMKMSGAG AGPGGNNSNL IRHSSSPAGL 180 FSNITIENGY VMMKGMGDYG GGNNTIKRES TSYASSGKPP TGAKPMSPIV EVDNKTSNAG 240 FKEGHNGNYS TGFPMDSWDD SSMMPENIVS EVNRLREDDR TLSGLSATET QSIDLGTRPP 300 PLLAHHLSLP KDIATIEKLL HYQDSVPCKI RAKRGCATHP RSIAERVRRT KISERMRKLQ 360 ELVPNMDKQT NTADMLDLAV DYVKELQCQV KALSDNRAKC TCAKQEQQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.16411 | 1e-163 | fruit |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00195 | DAP | Transfer from AT1G51140 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006493662.1 | 0.0 | transcription factor bHLH122 | ||||
Refseq | XP_024949417.1 | 0.0 | transcription factor bHLH122 | ||||
TrEMBL | A0A067FBZ2 | 0.0 | A0A067FBZ2_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NMJ0 | 0.0 | A0A2H5NMJ0_CITUN; Uncharacterized protein | ||||
STRING | XP_006493662.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10547 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51140.1 | 3e-59 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g015337m |
Entrez Gene | 102625251 |