PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g015258m | ||||||||
Common Name | CISIN_1g015258mg, LOC102614544 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bZIP | ||||||||
Protein Properties | Length: 411aa MW: 45542.9 Da PI: 7.8528 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.9 | 3e-10 | 125 | 165 | 5 | 45 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L orange1.1g015258m 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 165 788*************************9777777666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.1E-7 | 114 | 168 | No hit | No description |
SMART | SM00338 | 2.7E-9 | 121 | 184 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.415 | 123 | 167 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.3E-7 | 125 | 165 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 2.41E-21 | 125 | 177 | No hit | No description |
SuperFamily | SSF57959 | 6.0E-7 | 125 | 168 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 128 | 143 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 9.0E-31 | 207 | 282 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MENAVDLSRN SVFYQMKTGN QAVGTDVQFG TLSKTLASSD INLSSHIVGS QSMPLQKEPQ 60 SNLISVSSGH RENWGESNMA EASPITDTST DDTEDKNQRF ERGQLTAVAA SDSSDKSKEK 120 SGDQKTLRRL AQNREAARKS RLRKKAYVQQ LESSRLKLTQ LEQELQRARQ QGIFISSSGD 180 QSHSMSGNGA AAFDVEYSRW LEEHNRHIVE LRAAVNSHAG DTELRTIVDN VTSHFDEIFR 240 LKGIASKADV FHILSGMWKT PAERCFMWIG GFRSSELLKL LVNQLEPLTE QQLVGIYNLQ 300 QSSQQAEDAL SQGMDALQQS LAETLANGSP SPSGTSGNVA NYMGQMAMAM GKLGTLEGFL 360 RQADNLRQQT LQQMHRILTT RQSARALLAI NDYFSRLRAL SSLWLARPRE * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.2970 | 1e-116 | callus |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006421096.1 | 0.0 | transcription factor HBP-1b(c38) | ||||
Refseq | XP_006421097.1 | 0.0 | transcription factor HBP-1b(c38) | ||||
Refseq | XP_006477494.1 | 0.0 | transcription factor HBP-1b(c38) | ||||
Refseq | XP_024954454.1 | 0.0 | transcription factor HBP-1b(c38) | ||||
Swissprot | O24160 | 0.0 | TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1 | ||||
TrEMBL | A0A067E0Z9 | 0.0 | A0A067E0Z9_CITSI; Uncharacterized protein | ||||
TrEMBL | V4S682 | 0.0 | V4S682_9ROSI; Uncharacterized protein | ||||
STRING | XP_006477494.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006421095.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM667 | 28 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-138 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g015258m |
Entrez Gene | 102614544 |