PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g014918m
Common NameCISIN_1g013033mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 417aa    MW: 45359.4 Da    PI: 7.811
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g014918mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.41.6e-104873126
                       --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                       ++++ C f++rtG C yG++C+F+H+
  orange1.1g014918m 48 PGEPDCLFYRRTGLCGYGSNCRFNHP 73
                       5789*********************8 PP
2zf-CCCH37.44.1e-1291116227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        +++ C ++++tGtCkyG++Ck++H++
  orange1.1g014918m  91 GQPDCGYYLKTGTCKYGSTCKYHHPK 116
                        5799********************96 PP
3zf-CCCH41.91.6e-13250275227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        +++ Cr+++ tGtCkyG+ CkF+H++
  orange1.1g014918m 250 DQPDCRYYMNTGTCKYGADCKFHHPK 275
                        6899********************96 PP
4zf-CCCH34.73e-11295320126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +++++C++++ +G+Ck+G++C+F H+
  orange1.1g014918m 295 PGQAICSNYSMYGICKFGPTCRFDHP 320
                        5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.5E-54774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8964775IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-84973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-55274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-45372IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-689116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.95389117IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-991116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-694117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-495115IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6248275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.455248276IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10250275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-7252277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-6254275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6294320IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6294321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911294322IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-8296320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001299319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MPDNRQVKSN AVANQSADNI EEAIWRLKIH DNQEGGGVAQ ASPYPARPGE PDCLFYRRTG  60
LCGYGSNCRF NHPAYAAQGA QYREELPERN GQPDCGYYLK TGTCKYGSTC KYHHPKDRNG  120
AGPVSFNILG LPMRQDEKSC PYYMRTGSFL PSSGLQYAGS LPTWSLQRAP YLSSRLQGTQ  180
SYMPLIVSPS QGIVPAPGWN TYMGNIGPLS PTSIAGSNLI YSSRNQGDLG AGAQMHILSA  240
SSQNLPERPD QPDCRYYMNT GTCKYGADCK FHHPKERIAQ SAASNIGPLG LPSRPGQAIC  300
SNYSMYGICK FGPTCRFDHP YAGYPINYGL SLPPLSILDS SLMNHQAISA THSIETSPDA  360
SSKIPNWVQN SDAVSVQHQN PDMKNSTTKN SDDSSKVDHP PHSVPNCSEP PHDQSN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.65200.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447662.10.0zinc finger CCCH domain-containing protein 3
RefseqXP_006469597.10.0zinc finger CCCH domain-containing protein 3
TrEMBLA0A067EWT30.0A0A067EWT3_CITSI; Uncharacterized protein
STRINGXP_006469597.10.0(Citrus sinensis)
STRINGXP_006447662.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-113C3H family protein