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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g014805m | ||||||||
Common Name | CISIN_1g013033mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 419aa MW: 45150.2 Da PI: 7.7785 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.4 | 1.6e-10 | 48 | 73 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C f++rtG C yG++C+F+H+ orange1.1g014805m 48 PGEPDCLFYRRTGLCGYGSNCRFNHP 73 5789*********************8 PP | |||||||
2 | zf-CCCH | 37.4 | 4.2e-12 | 91 | 116 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++++tGtCkyG++Ck++H++ orange1.1g014805m 91 GQPDCGYYLKTGTCKYGSTCKYHHPK 116 5799********************96 PP | |||||||
3 | zf-CCCH | 38.4 | 2e-12 | 138 | 161 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ orange1.1g014805m 138 KSCPYYMRTGSCKFGVACKFHHPQ 161 66********************97 PP | |||||||
4 | zf-CCCH | 41.9 | 1.6e-13 | 252 | 277 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ Cr+++ tGtCkyG+ CkF+H++ orange1.1g014805m 252 DQPDCRYYMNTGTCKYGADCKFHHPK 277 6899********************96 PP | |||||||
5 | zf-CCCH | 34.7 | 3e-11 | 297 | 322 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++ +G+Ck+G++C+F H+ orange1.1g014805m 297 PGQAICSNYSMYGICKFGPTCRFDHP 322 5789*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.5E-5 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.896 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.2E-8 | 49 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 52 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-4 | 53 | 72 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-6 | 89 | 116 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.953 | 89 | 117 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 91 | 116 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-6 | 94 | 117 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-4 | 95 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 133 | 162 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.352 | 134 | 162 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.7E-5 | 136 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-10 | 137 | 161 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-5 | 139 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-6 | 250 | 277 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.455 | 250 | 278 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-10 | 252 | 277 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.5E-7 | 254 | 279 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-6 | 256 | 277 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-6 | 296 | 323 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.911 | 296 | 324 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.41E-6 | 296 | 322 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-8 | 298 | 322 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 301 | 321 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MPDNRQVKSN AVANQSADNI EEAIWRLKIH DNQEGGGVAQ ASPYPARPGE PDCLFYRRTG 60 LCGYGSNCRF NHPAYAAQGA QYREELPERN GQPDCGYYLK TGTCKYGSTC KYHHPKDRNG 120 AGPVSFNILG LPMRQDEKSC PYYMRTGSCK FGVACKFHHP QPSSLGTALP LTGNASLGSM 180 GSSVLPSSGL QYAGIVPAPG WNTYMGNIGP LSPTSIAGSN LIYSSRNQGD LGAGAQMHIL 240 SASSQNLPER PDQPDCRYYM NTGTCKYGAD CKFHHPKERI AQSAASNIGP LGLPSRPGQA 300 ICSNYSMYGI CKFGPTCRFD HPYAGYPINY GLSLPPLSIL DSSLMNHQAI SATHSIETSP 360 DASSKIPNWV QNSDAVSVQH QNPDMKNSTT KNSDDSSKVD HPPHSVPNCS EPPHDQSN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.12088 | 0.0 | callus |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447662.1 | 0.0 | zinc finger CCCH domain-containing protein 3 | ||||
Refseq | XP_006469597.1 | 0.0 | zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A067F7T5 | 0.0 | A0A067F7T5_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PS26 | 0.0 | A0A2H5PS26_CITUN; Uncharacterized protein | ||||
STRING | XP_006469597.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006447662.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-118 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g014805m |