PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g014781m
Common NameCISIN_1g014781mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 420aa    MW: 48730.2 Da    PI: 8.736
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g014781mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.3e-09213252345
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        +WT+eE el  +  +++G++ Wkt a t+g  + + ++k+ w+
  orange1.1g014781m 213 KWTPEELELVRKFYEKHGSD-WKTMADTLG--KHRFHVKDAWR 252
                        8*******************.********9..56677777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0054137208IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-5140227IPR009057Homeodomain-like
SMARTSM007170.13210257IPR001005SANT/Myb domain
SuperFamilySSF466891.71E-9211272IPR009057Homeodomain-like
PROSITE profilePS500906.632213255IPR017877Myb-like domain
PfamPF139218.4E-12214272No hitNo description
Gene3DG3DSA:1.10.10.603.0E-9228266IPR009057Homeodomain-like
PROSITE profilePS500908.072256324IPR017877Myb-like domain
SMARTSM007172.3260326IPR001005SANT/Myb domain
SuperFamilySSF466896.12E-6261380IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-7267324IPR009057Homeodomain-like
PROSITE profilePS500907.236326379IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MNTENEKDGK KKKKRKLGIN EAKKNKDERF NNEDEVSGVL NQGLKHHLEL EENTSLHEQK  60
NDLEEEGENN KKKKAMSMGK HSGGDKKVSR TKKGVKPNDP SESSAQKERP KKVSFSDHVQ  120
VVPSSEAKSD KNDGFIRGKR FSLEEDEMIK KAVINYIEAH RLGEDGLNMV LHCRSYPEIK  180
HCWKEIGAAL PWRPCESIYY RAHILFERDE NRKWTPEELE LVRKFYEKHG SDWKTMADTL  240
GKHRFHVKDA WRRIKLPNQK KGQWSQEEYQ KLFALVNMDL RMKASEEKRT KHGMLRDNIS  300
WEAISEKLST RTNAICCMKW YDQLTSPMVA EGKWADTDDF HLVNALSGLD ACCMDDVDWD  360
NLLEHRSGTF CRKRWNQMVK HLGTDGNKSF PEQVEILSTR YCPDVLEARL AYNSKGTTV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1915KKKKKRK
2916KKKKKRKL
31015KKKKRK
41116KKKRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.117130.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006468375.10.0RNA polymerase I termination factor-like
TrEMBLA0A067GD990.0A0A067GD99_CITSI; Uncharacterized protein
STRINGXP_006468375.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-131MYB_related family protein