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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g014662m | ||||||||
Common Name | CISIN_1g014667mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | CO-like | ||||||||
Protein Properties | Length: 421aa MW: 45571.6 Da PI: 4.8428 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.8 | 7e-06 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +C+ +++++ + +C+++ +lC +C + H H+ orange1.1g014662m 4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLAnalskrHS 43 6**************************9994334555565 PP | |||||||
2 | zf-B_box | 22.8 | 1.9e-07 | 46 | 89 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C++++++++ C + ++ lC++C +H g H++++ orange1.1g014662m 46 LLCERCNSQPALVRCAEERVSLCQNCDWIGH-GtstsassHKRQT 89 57*****************************.5588888888766 PP | |||||||
3 | CCT | 59.1 | 1.5e-20 | 361 | 404 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+ktRkF+K++rY+sRKa+A+ R RvKGrFvk+ orange1.1g014662m 361 RSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAG 404 889**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.471 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.8E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.43E-7 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.058 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.45E-5 | 47 | 90 | No hit | No description |
SMART | SM00336 | 1.3 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 2.3E-15 | 361 | 403 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.279 | 361 | 403 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MGYMCDFCGD QRSIVYCRSD AACLCLSCDR NVHLANALSK RHSRTLLCER CNSQPALVRC 60 AEERVSLCQN CDWIGHGTST SASSHKRQTI NCYSGCPSAS ELSSIWSFVL DFPSGGESAC 120 EQELGLMSIT DNSIKNSWGP NEDSISQNAA GGGVEANDVC DADKSNVRVG ATSVPGINST 180 TQNRDQIHGS ANNPPLPKLC CSATKDLAFC EDDDLYEDFN MDEMDLNFEN YEELFGVTLN 240 HSEELLENGG IESLFGTKDM SAADSNCQGA VAAEGSSAGL VNAMQPACSN AASADSIMST 300 KTEPILCFTA KQGHSSLSFS GLTGDSNAGD YQECDASSML LMGEPPWCPP CPETSFTSAS 360 RSKAVLRYKE KKKTRKFDKR VRYASRKARA DVRRRVKGRF VKAGEAYDYD PLTQTETRSY 420 * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.11155 | 0.0 | flower |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447848.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_006469416.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_015382901.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_024951289.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9SSE5 | 1e-158 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A067E7E2 | 0.0 | A0A067E7E2_CITSI; Uncharacterized protein | ||||
STRING | XP_006469416.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006447847.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1682 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-133 | CONSTANS-like 9 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g014662m |