PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g013876m
Common NameCISIN_1g007316mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 435aa    MW: 48661.1 Da    PI: 4.9578
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g013876mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix107.49.3e-34239324187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW+k ev+aLi++r+e+ ++++++  k+plWee++++mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +++s+tcpyfdql+a
  orange1.1g013876m 239 RWPKAEVQALIKFRTELANKYQENGPKGPLWEEIAAAMRSVGYNRNAKRCKEKWENINKYFKKVKESNKKR-PDDSKTCPYFDQLDA 324
                        8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.8E-4236298IPR001005SANT/Myb domain
SuperFamilySSF466895.83E-5237304IPR009057Homeodomain-like
PfamPF138371.4E-23238325No hitNo description
CDDcd122035.87E-28238303No hitNo description
Gene3DG3DSA:1.10.10.602.3E-5238295IPR009057Homeodomain-like
PROSITE profilePS500907.549238296IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MQAIPWTMNP PSSVPAHIKN VVTSISAANP IQAVPQSTVI APPTNPTVSA AAAPPLAQPV  60
NNLPYSFANV SPNLFSSSTS SSTASEEYSE ERPTGTRKRK WKMFFKRLTK QVIKKQEELQ  120
YRFLEEMERR ERERIVRDEA WRVQEMARID REHEILIQER ATAAAKDAAV IAFLQNISGQ  180
QQIPVKENPQ PPPPTVVVQP VPAVPPQPQP PATTTPNNKP AANNNNYGGN VVMSTSSSRW  240
PKAEVQALIK FRTELANKYQ ENGPKGPLWE EIAAAMRSVG YNRNAKRCKE KWENINKYFK  300
KVKESNKKRP DDSKTCPYFD QLDALYREKS NKSSENNSGC YGNVKAVNHN TAPLMVLPEQ  360
QWPLHNNDHL QGQNQPPLNV NQIQEDDEEE EEEEEEEGNS EEGDEEEEEE EGNEGYEIVP  420
NKAAAAAAPM GNAE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19199RPTGTRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.13310.0fruit
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434456.10.0trihelix transcription factor GT-2
RefseqXP_006473054.10.0trihelix transcription factor GT-2-like
RefseqXP_006473055.10.0trihelix transcription factor GT-2-like
SwissprotQ391178e-85TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A067GVW70.0A0A067GVW7_CITSI; Uncharacterized protein
STRINGXP_006473054.10.0(Citrus sinensis)
STRINGXP_006473055.10.0(Citrus sinensis)
STRINGXP_006434456.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.17e-69Trihelix family protein