PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g013225m
Common NameCISIN_1g013225mg, LOC102622241
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 448aa    MW: 48025.5 Da    PI: 7.345
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g013225mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20214263255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  orange1.1g013225m 214 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 263
                        7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-22214272IPR016177DNA-binding domain
SMARTSM003803.3E-37214277IPR001471AP2/ERF domain
PROSITE profilePS5103225.712214271IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-33214272IPR001471AP2/ERF domain
PfamPF008474.0E-14214263IPR001471AP2/ERF domain
PRINTSPR003671.3E-11215226IPR001471AP2/ERF domain
CDDcd000181.03E-14222273No hitNo description
PRINTSPR003671.3E-11237253IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MCILNKVANQ RGSVEGSSFP TGSGGEAQDQ QDDQSYGQEN IIESQSGHFQ RATSNQITES  60
PSTAAASLMG YDHAREMSAM VSALTRVVSG QRAATDVGYS ATGFGLASAS ASASVSASPA  120
SASGLWIGHK RGREEAEAAQ LAPRLYRGFG DFRDSSSSSS AGAIITQEPT SSIAAPATTA  180
TTTTTATIPT TPSSESSSSG VSYEETSGGE RRRRYRGVRQ RPWGKWAAEI RDPHKAARVW  240
LGTFDTAEAA ARAYDEAALR FRGNRAKLNF PENVRIVPPL QPQPQPQPQP QQHQQVLQNI  300
PTRQTPNFAT VATNFHQQQQ QRQLQTATMP PFFMSQGYQD YFDYSQLLQN QPTSLLEQML  360
QPQTQTHQIA SMQPPLLSSS LSSYSFGPSS SSASSVSSSS ASFPLLFGDQ QLGFFRPPQN  420
QSQSSGSDFP ASPPPWSHSG HYPPSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22213274163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209214ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473086.10.0ethylene-responsive transcription factor ABR1 isoform X1
TrEMBLA0A067H7V80.0A0A067H7V8_CITSI; Uncharacterized protein
STRINGXP_006473085.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15224819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-13ethylene response factor 110