PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g013208m
Common NameCISIN_1g013261mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 448aa    MW: 51006.9 Da    PI: 6.5477
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g013208mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.75.7e-27122218185
           trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                        +W +++v++Li+a+++++e+ ++++           +kk++W+++sk+m+ergf++sp+qC++k+++lnkrykk++++ +++ +++++++ +
  orange1.1g013208m 122 KWADKMVKLLITAVSYVGEDTSSDCgggarrkfavlQKKGKWKAISKVMAERGFHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPS 213
                        7**********************9888999999999**********************************************6699999988 PP

           trihelix  81 yfdql 85 
                        ++d +
  orange1.1g013208m 214 LLDVI 218
                        87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.1E-23120245No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MEGNLSQGGM IPGGASFGGI DLQGSMRVHH QAQHPHAMHP HHHTINPRQG PSVHPSIHEG  60
FPLTIGTMQS SDQTISMTDY NKGERGKNSF SDDDDPSLTE EGGEGHNDAG KGKKGSPWQR  120
VKWADKMVKL LITAVSYVGE DTSSDCGGGA RRKFAVLQKK GKWKAISKVM AERGFHVSPQ  180
QCEDKFNDLN KRYKKLNDML GRGTSCQVVE NPSLLDVIDF LTEKEKDDVR KILSSKHLFY  240
EEMCSYHNGN RLHLPHDLPL QRSLQLALRS RDDHDNDDVR RHIHDPDEDD QDMETDDHDE  300
FEDNHALHGD SRGTYGIAGC SAKRQRQGQG HEDVCLGNSM NPLDFNKSSY PPQVAQADMN  360
QALPESMKSS WLQKQWIESR SLQLEEQKLQ IQVEMLELEK QRFKWQRFSK KRDRELEKLR  420
MENERMKLEN ERMALELKQK EMGADFS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434454.10.0uncharacterized protein LOC18041979
TrEMBLA0A067GYJ60.0A0A067GYJ6_CITSI; Uncharacterized protein
TrEMBLV4V6N50.0V4V6N5_9ROSI; Uncharacterized protein
STRINGXP_006434454.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-169sequence-specific DNA binding transcription factors