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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
orange1.1g013033m |
Common Name | CISIN_1g013033mg, LOC102610029 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
C3H |
Protein Properties |
Length: 452aa MW: 48782.4 Da PI: 8.0264 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g013033m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 32.3 | 1.7e-10 | 48 | 73 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
++++ C f++rtG C yG++C+F+H+
orange1.1g013033m 48 PGEPDCLFYRRTGLCGYGSNCRFNHP 73
5789*********************8 PP
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2 | zf-CCCH | 37.3 | 4.6e-12 | 91 | 116 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++ C ++++tGtCkyG++Ck++H++
orange1.1g013033m 91 GQPDCGYYLKTGTCKYGSTCKYHHPK 116
5799********************96 PP
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3 | zf-CCCH | 38.3 | 2.2e-12 | 138 | 161 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27
+ C++++rtG Ck+G CkF+H++
orange1.1g013033m 138 KSCPYYMRTGSCKFGVACKFHHPQ 161
66********************97 PP
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4 | zf-CCCH | 41.8 | 1.8e-13 | 285 | 310 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++ Cr+++ tGtCkyG+ CkF+H++
orange1.1g013033m 285 DQPDCRYYMNTGTCKYGADCKFHHPK 310
6899********************96 PP
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5 | zf-CCCH | 34.5 | 3.3e-11 | 330 | 355 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+++++C++++ +G+Ck+G++C+F H+
orange1.1g013033m 330 PGQAICSNYSMYGICKFGPTCRFDHP 355
5789*********************9 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 12.896 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-5 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-8 | 49 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 52 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-4 | 53 | 72 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-6 | 89 | 116 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.953 | 89 | 117 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-9 | 91 | 116 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-6 | 94 | 117 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-4 | 95 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 133 | 162 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.352 | 134 | 162 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.7E-5 | 136 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-10 | 137 | 161 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-5 | 139 | 160 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.455 | 283 | 311 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-6 | 283 | 310 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-10 | 285 | 310 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.42E-7 | 287 | 312 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-6 | 289 | 310 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.06E-6 | 329 | 355 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-6 | 329 | 356 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.911 | 329 | 357 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-8 | 331 | 355 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 452 aa
Download sequence Send
to blast |
MPDNRQVKSN AVANQSADNI EEAIWRLKIH DNQEGGGVAQ ASPYPARPGE PDCLFYRRTG 60 LCGYGSNCRF NHPAYAAQGA QYREELPERN GQPDCGYYLK TGTCKYGSTC KYHHPKDRNG 120 AGPVSFNILG LPMRQDEKSC PYYMRTGSCK FGVACKFHHP QPSSLGTALP LTGNASLGSM 180 GSSVLPSSGL QYAGSLPTWS LQRAPYLSSR LQGTQSYMPL IVSPSQGIVP APGWNTYMGN 240 IGPLSPTSIA GSNLIYSSRN QGDLGAGAQM HILSASSQNL PERPDQPDCR YYMNTGTCKY 300 GADCKFHHPK ERIAQSAASN IGPLGLPSRP GQAICSNYSM YGICKFGPTC RFDHPYAGYP 360 INYGLSLPPL SILDSSLMNH QAISATHSIE TSPDASSKIP NWVQNSDAVS VQHQNPDMKN 420 STTKNSDDSS KVDHPPHSVP NCSEPPHDQS N*
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