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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
orange1.1g011776m |
Common Name | CISIN_1g011776mg, LOC102609765 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
C3H |
Protein Properties |
Length: 478aa MW: 51028.5 Da PI: 8.9385 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g011776m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 35.5 | 1.7e-11 | 52 | 76 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+ C f++rtG C yGdrC+++H++
orange1.1g011776m 52 VPDCVFYMRTGVCGYGDRCRYNHPR 76
689********************96 PP
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2 | zf-CCCH | 42 | 1.5e-13 | 95 | 121 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+++++C+f+++tGtCk+G++CkF+H++
orange1.1g011776m 95 PGEPICQFYLKTGTCKFGASCKFHHPK 121
5799*********************96 PP
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3 | zf-CCCH | 36.6 | 7.5e-12 | 142 | 167 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++C+++++tG+Ck+G +CkF+H++
orange1.1g011776m 142 GEKECSYYLKTGQCKFGITCKFHHPQ 167
7899********************97 PP
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4 | zf-CCCH | 38.6 | 1.8e-12 | 298 | 324 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+++++C++f++tG Ck+G++C+F+H++
orange1.1g011776m 298 PGEPECQYFLKTGDCKFGSSCRFHHPR 324
5799*********************96 PP
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5 | zf-CCCH | 34.2 | 4.3e-11 | 347 | 370 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27
+C f++++G Ck+G++CkF H++
orange1.1g011776m 347 QPCTFYLQNGRCKFGATCKFDHPM 370
69********************95 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 13.094 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 52 | 77 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-8 | 52 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-5 | 55 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.652 | 94 | 122 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.5E-8 | 94 | 121 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-11 | 96 | 121 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-6 | 98 | 122 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 99 | 121 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.821 | 140 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-5 | 140 | 167 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.11E-6 | 142 | 168 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-9 | 142 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-4 | 146 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.986 | 297 | 325 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2E-6 | 297 | 324 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-9 | 299 | 324 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-6 | 302 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-5 | 303 | 324 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.338 | 343 | 371 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-6 | 343 | 370 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-6 | 346 | 374 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-5 | 347 | 369 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-8 | 347 | 370 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 478 aa
Download sequence Send
to blast |
MELYGRNNTS RNGSQSGHQP QWSPTDQATG LEESMWQSDL KVNESYPQRH GVPDCVFYMR 60 TGVCGYGDRC RYNHPRNRAA VEAAVRATGD YPDRPGEPIC QFYLKTGTCK FGASCKFHHP 120 KHSGGSMSHV PLNIYGYPLR PGEKECSYYL KTGQCKFGIT CKFHHPQPAG TSLPASAPQF 180 YPPVQSPTVP MAEQYGGAST SLRVARPPLL ASSYVQGAYG PVLFSPGVVP FSGWNPYSAS 240 VSPVLSPGAQ PAVGATSLYG VTQISSSMPA LAGLYPSLPS SAGPSSSGQM EQSFPERPGE 300 PECQYFLKTG DCKFGSSCRF HHPRDRVVPR TNCALSPLGL PLRPGAQPCT FYLQNGRCKF 360 GATCKFDHPM GAMRYSPSAS SLIETPVAPY PVGSLLSTLA PASSSSDLRP ELISGSKKDS 420 LLSRIPSSGN TSSSSVGLIF SQTGSVPLSD LQLSGQSSVP LSSSRSARQG VEVRRLS*
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