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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
orange1.1g011752m |
Common Name | CISIN_1g011752mg, LOC102629672 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
Dof |
Protein Properties |
Length: 479aa MW: 52160.4 Da PI: 6.8315 |
Description |
Dof family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g011752m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-Dof | 123.7 | 5.9e-39 | 126 | 185 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+
orange1.1g011752m 126 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNC 185
7899*****************************************************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 479 aa
Download sequence Send
to blast |
MRQESKDPAI RLFGKKIAFP SDGEVPVIFS EELPSPAAKE ECSIEAEEEK AEEDSSAVKA 60 AETTQQDDTT PPNIDESKIP ESPEANVNPK TPSIDDETAK SKAAKSEKSQ NDASNSNSQE 120 KTLKKPDKIL PCPRCNSMDT KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR 180 KNKNCASQYR HITISEALQA ARIDAPNGIS HPSVKSNGRV LSFGLDAPIC DSMASVLNLA 240 EKKVLNGTRN GFHGFQEQEI PVPCRGGENG DDCSSGSSIT VSNPMEEVGR NGMQEPLMRS 300 INGFPSPIPC LPGVPWPYPW NASVPPPAFC PSGFPMSFYP AAFWNCGIPS TWNMPWISPQ 360 SSPNQKSPSS GPNSPTLGKH SRDADMIKSE NMDKEELSKE KNRCVLVPKT LRIDDPNEAA 420 KSSIWATLGI KNESLAGGRL FKGLQSKSDE KSHMAETSPV LRANPAALSR SLNFHEST*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269|PubMed:19619493}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Corrales AR, et al.
Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] - Renau-Morata B, et al.
Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] - Henriques R, et al.
The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]
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