PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g011640m
Common NameCISIN_1g011640mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family SBP
Protein Properties Length: 481aa    MW: 52485.4 Da    PI: 7.5196
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g011640mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.14.4e-42186262278
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        CqvegC  dls+ak+yhr+h+vCe hsk+p+v+v gle+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+
  orange1.1g011640m 186 CQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQP 262
                        **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-34179247IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.573183260IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.71E-39184265IPR004333Transcription factor, SBP-box
PfamPF031106.7E-32186259IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MSSMMEWNGK TPLQWDWENL IMFNATAAEN PRKTRQIEWE IDGDGGIDST SFFSSGGGDG  60
SGGSISDMGL ASLSKSSKSA SNNSSSMGET KTSKFRLEAS DDVLEDFDLK KEFAKAEPTG  120
GSPTLEASVG SGEPLLGLKL GKRMYFEDIS AGGNGKNSSF PAVCGSYSTS AKRSRSNPQT  180
TQAALCQVEG CGLDLSSAKD YHRKHRVCEN HSKSPKVIVG GLERRFCQQC SRFHGLSEFD  240
EKKRSCRRRL SDHNARRRKS QPEAVRLNPA RLSSSLYDGK QQMTLVWNSV PFVHKNPTET  300
FTWEGTCVSK STQTKGYASK SAKGEGTDVL LQLHGNQPPN SVPARRDDSN GLLLSKAKVT  360
MAEVLDQGPE ESMISFDLGA TQDCHSALSL LSKTSWGICE PKKVSQQHPT STSLTNIPHA  420
VMPAMAQGSP FASSEYRQMG KLSTEFQVHA SSFHQDEGNY SQEIQLFRAP YESDFYPTVD  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-281852591084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241258KKRSCRRRLSDHNARRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.118070.0flower| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438013.10.0squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_006484112.10.0squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_006484113.10.0squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_006484114.10.0squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_006484115.10.0squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_024042527.10.0squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_024042528.10.0squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_024042529.10.0squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_024042530.10.0squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_024042531.10.0squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_024042532.10.0squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_024042533.10.0squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_024042534.10.0squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_024042535.10.0squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_024956235.10.0squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_024956236.10.0squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_024956237.10.0squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_024956238.10.0squamosa promoter-binding-like protein 2 isoform X1
TrEMBLA0A067GT750.0A0A067GT75_CITSI; Uncharacterized protein
STRINGXP_006484112.10.0(Citrus sinensis)
STRINGXP_006438013.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.35e-86squamosa promoter binding protein-like 2