PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g011207m
Common NameCISIN_1g011207mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 492aa    MW: 55720 Da    PI: 6.2779
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g011207mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.83.3e-24128224186
           trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 
                        +Wt+++v++Li a+ +++++++++           +kk++W++vs++m ergf +sp+qC++k+++lnkryk+++e+ +k+ +++++++ ++
  orange1.1g011207m 128 KWTDSMVKLLILAVLYIGDEVGSDGndkkktgallQKKGKWKSVSRAMLERGFYVSPQQCEDKFNDLNKRYKRVNEILGKGtACRVVENQSL 219
                        7**************99999997534566888899**********************************************559*******9 PP

           trihelix  82 fdqle 86 
                        ++ ++
  orange1.1g011207m 220 LETMD 224
                        99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-20126249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MEPNGLQGGL FSGIASGMLG LEMPLHPQSQ PQPQPQPQQQ NPQTNPQNPH HYPQMVAFSH  60
HPHDTELHHT QTQSQQSVKQ QHGYLFSSKQ KQQQLSPLSD EDELGLTPDD SAGDGKRKAS  120
SSPWQRMKWT DSMVKLLILA VLYIGDEVGS DGNDKKKTGA LLQKKGKWKS VSRAMLERGF  180
YVSPQQCEDK FNDLNKRYKR VNEILGKGTA CRVVENQSLL ETMDLTPKMK EEVKKLLNSK  240
HLFFKEMCAY HSTCGHGSGT GGTPGANHSP EVATEPSVVQ QQQAQHRCLH SSETSQLGAN  300
SNRAEMEGTK LVKVGSDEED DVEEDESDDD DYDDDDDEAV GNSRGQQNGH GQEDEDENDE  360
KLSRKRQRQG SLPVPVSPMV LQLRCEVSNV IQDGAKTSWE KKQWMKMKLL QLEEQQISYQ  420
YQAFELEKQR LKWVKFSSKK EREMEKAKLV NERRRLENER MLLALRQKDY ELLDQQQHSS  480
NKRSDPSSIT G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.179240.0callus| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024038474.10.0uncharacterized protein LOC18038704 isoform X1
TrEMBLA0A067F4E60.0A0A067F4E6_CITSI; Uncharacterized protein
STRINGXP_006430334.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.14e-63sequence-specific DNA binding transcription factors