PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g011169m | ||||||||
Common Name | CISIN_1g011169mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Dof | ||||||||
Protein Properties | Length: 493aa MW: 53223.6 Da PI: 6.2597 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125 | 2.4e-39 | 98 | 157 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ orange1.1g011169m 98 PDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHF 157 68999*****************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-30 | 85 | 155 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.5E-32 | 100 | 156 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.723 | 102 | 156 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 104 | 140 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MNGGDMSAPI KDPAIKLFGA KIPVPDTRIP DVCKQITKEE AEDNHEYNSE EPDKSSSLNN 60 VKEGARNFVQ ANGIQANAKT KADQSESNTD QEKAFKRPDK IIPCPRCNSM DTKFCYFNNY 120 NVNQPRHFCK NCQRYWTAGG TMRNVPVGAG RRKNKHFASQ YRQILVSSDG VPVTGLETPN 180 SANQQLMLCG DSATTFRPST GNGTVLKFGP ETPLCESMEN VLNLRDQKRS VEICTVTCVE 240 NKEEPSSSGS PVTASSIRGN ELPESVMQKE QVMMTGSCNE LNMQQSMHCY PVSPWGVPWN 300 PNNVASMEAA QNPSDRVCVP NGSNPGPVQW CPTTVLAVPG FCAPNIPLQF VPASYWGMGV 360 WAAGAGNIPL TGSNGCLSPS SSTSNNSCCS GNGSPTLGKH SRDPNLTDEG QSEKCVLVPK 420 TLRIDDPDEA SRSPIWATLG FKPDQKDLKS GGAIFKDFET KKGGKADVLD GAEILESNPA 480 ALSRSHTFQE ST* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006443525.1 | 0.0 | cyclic dof factor 3 | ||||
Refseq | XP_006479196.1 | 0.0 | cyclic dof factor 3-like | ||||
TrEMBL | A0A067FF98 | 0.0 | A0A067FF98_CITSI; Uncharacterized protein | ||||
STRING | XP_006479196.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006443525.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15591 | 10 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 9e-48 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g011169m |