PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g011012m
Common NameCISIN_1g011012mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 496aa    MW: 54560.2 Da    PI: 5.6322
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g011012mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS345.31e-1051074881374
               GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsv.....selykalppsetseknsseelaalklf 84 
                        lv+lL+++Aea++  +++  laq +L rl+el+sp++ ++m+Rlaayft AL+  l + +     ++ y +  p + ++++++++laa++l+
  orange1.1g011012m 107 LVHLLMAAAEALTGVNKSreLAQVILIRLKELVSPNDgSNMERLAAYFTDALQGLLEGAGgvhgnNKHYTSNGPHHRDDHHHTDVLAAFQLL 198
                        68***********85554449***********8887669*****************9843111113444445555555556*********** PP

               GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeel 172
                        +++sP++kf+h+taNqaIleav++++rvHi+D+di++G+QW++L+qaL sR++gpp  +lRiT++++  sg  s  +++etg+rL  fA+++
  orange1.1g011012m 199 QDMSPYVKFGHFTANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPapHLRITALSRGGSGrrSISTVQETGRRLVAFAASI 290
                        ****************************************************776555*********888899999**************** PP

               GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealey 263
                        g pf+f+    ++ e+++ ++L++ +gEal++n++l+l ++  +    ++ + ++L+  k+l+P++v++ve+e+   +++ F+ rf+++l++
  orange1.1g011012m 291 GQPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYR---APDSIASFLSGAKTLNPRLVTLVEEETGPiGDGGFVSRFMDSLHH 379
                        ********9999***************************99844...4444569*******************9888*************** PP

               GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee. 354
                        ysa++dslea++p +s++r+ vEr++lg++i+  +a   +     +e++ +W ++l+ +GFkpv++s  + +qaklll  ++ dgyrvee  
  orange1.1g011012m 380 YSAVYDSLEAGFPMQSRARALVERVFLGPRISGSLARIYRT--CGEEEVYSWGDWLGVVGFKPVNISFANHCQAKLLLGLFN-DGYRVEELa 468
                        ************************************99876..778889*********************************.******975 PP

               GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                        ++ lvlgWk+r+L+s+S+W+
  orange1.1g011012m 469 NNRLVLGWKSRRLLSASVWT 488
                        88999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.481468IPR005202Transcription factor GRAS
PfamPF035143.4E-103107488IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MAMDFDDFLH LDFSGYSSTT TTTTTGDDYA CNWNDWSPVV DWEALSGGQD DFHDLIESMM  60
DDSGLNPNAR VANIAHEPCN SVSTETSSSS MAVDEETNGE DFKGLRLVHL LMAAAEALTG  120
VNKSRELAQV ILIRLKELVS PNDGSNMERL AAYFTDALQG LLEGAGGVHG NNKHYTSNGP  180
HHRDDHHHTD VLAAFQLLQD MSPYVKFGHF TANQAILEAV ANDRRVHIVD YDIMEGIQWA  240
SLMQALVSRK DGPPAPHLRI TALSRGGSGR RSISTVQETG RRLVAFAASI GQPFSFHQCR  300
LDSDETFKAS ALKLVRGEAL IINCMLHLPH FSYRAPDSIA SFLSGAKTLN PRLVTLVEEE  360
TGPIGDGGFV SRFMDSLHHY SAVYDSLEAG FPMQSRARAL VERVFLGPRI SGSLARIYRT  420
CGEEEVYSWG DWLGVVGFKP VNISFANHCQ AKLLLGLFND GYRVEELANN RLVLGWKSRR  480
LLSASVWTSS FDSNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5610048812379Protein SCARECROW
5b3h_A8e-5710048811378Protein SCARECROW
5b3h_D8e-5710048811378Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and leaves. {ECO:0000269|PubMed:15961668}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006472746.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A067GM900.0A0A067GM90_CITSI; Uncharacterized protein
STRINGXP_006472746.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-175GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]