PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g010601m | ||||||||
Common Name | CISIN_1g010601mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Trihelix | ||||||||
Protein Properties | Length: 507aa MW: 59129.8 Da PI: 6.896 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 92.7 | 3.6e-29 | 96 | 181 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r+++++++++++ kkplW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea orange1.1g010601m 96 RWPRQETLTLLEIRSRLDSKFKEANHKKPLWDEVSRIMaEEHGYHRSEKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 181 8*************************************999*****************************98..55667*******85 PP | |||||||
2 | trihelix | 48.7 | 2e-15 | 388 | 460 | 1 | 72 |
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 rW + e+l L+++ +++e ++++ g +++ Wee+++km++ g+ rs+++ kekwen++++y + ++ ++ orange1.1g010601m 388 RWNEPETLNLMQLITSLEPKFEQsGYSNESIWEEIAAKMASFGYYRSAIEFKEKWENMQMYYHHHGHDQIAKQ 460 8********************974679***********************************98887777654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.178 | 89 | 154 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.033 | 93 | 156 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 3.66E-19 | 96 | 161 | No hit | No description |
Pfam | PF13837 | 6.5E-21 | 96 | 182 | No hit | No description |
SMART | SM00717 | 2.5 | 385 | 448 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 2.21E-16 | 388 | 449 | No hit | No description |
PROSITE profile | PS50090 | 6.632 | 388 | 446 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.3E-12 | 388 | 451 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MADQYGHQLP DLGRLATGRT HFPVNQETPQ PYFFNRSINN ETVMLAAGEM VLPAAGGLVR 60 FGHHHDFAAA ATNHPTAVVD MESSGWGNTN ESGNGRWPRQ ETLTLLEIRS RLDSKFKEAN 120 HKKPLWDEVS RIMAEEHGYH RSEKKCREKF ENLYKYYKKT KEGKAGRQDG KHYRFFRQLE 180 ALYGETSNNQ NSVSELSPLD QNTTNFLHQT PNQESQENQE ASNHLEQKLS DQSLSFSNTS 240 EFETASSGNN NDEDLSAIAF MMNQKSMEKH NKMNESRSGK RDKRSSNWKG KVKEFVDAQM 300 RELMESQEAW MERMLKTIED REKERLCKEE AWRKQEMARF DKVHEFWARE RAWVEGRDNA 360 LMEALKKVTG RREPEVVSSS SLIMHDCRWN EPETLNLMQL ITSLEPKFEQ SGYSNESIWE 420 EIAAKMASFG YYRSAIEFKE KWENMQMYYH HHGHDQIAKQ KLERMELFLP SNNPYAGTQG 480 HQSCFHIQQI NEGQQQFWEK GKTKRN* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First observed in the early-developing flower, in four zones between the initiating sepals and in their developing margins. Later detected in the margins of expanding sepals, petals and stamens, and in the leaf margins. {ECO:0000269|PubMed:15269176}. | |||||
Uniprot | TISSUE SPECIFICITY: Confined to flowers, at low levels. Also present in 7-days-old seedlings. Barely detectable in other tissues such as young seedlings, roots, stems, leaves and siliques (PubMed:15269176). Expressed in flower primordia, more precisely between newly arisen sepal primordia and also at the basal margins of developing sepals (PubMed:25697797). {ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:25697797}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC184063 | 5e-43 | AC184063.2 Populus trichocarpa clone Pop1-108K13, complete sequence. | |||
GenBank | AC214419 | 5e-43 | AC214419.1 Populus trichocarpa clone POP109-H02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006436672.1 | 0.0 | trihelix transcription factor PTL | ||||
Refseq | XP_006492187.1 | 0.0 | trihelix transcription factor PTL-like | ||||
Swissprot | Q9LZS0 | 3e-94 | PTL_ARATH; Trihelix transcription factor PTL | ||||
TrEMBL | A0A067E4D1 | 0.0 | A0A067E4D1_CITSI; Uncharacterized protein | ||||
STRING | XP_006492187.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006436672.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2767 | 28 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 1e-96 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g010601m |
Publications ? help Back to Top | |||
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