PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g009335m
Common NameCISIN_1g005715mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family BES1
Protein Properties Length: 538aa    MW: 60393.5 Da    PI: 5.791
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g009335mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822153.41.6e-47642042133
             DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl...eeaeaagssas 87 
                        g+g+k+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGw+ve+DGttyr   ++++++   ++++aa + ++
  orange1.1g009335m  64 GKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGTTYRlsnQSQSHHhlhQQMAAAAATTT 155
                        899******************************************************************77733333344644444433333 PP

             DUF822  88 .aspesslq..sslkssalaspvesysaspksssfpspssldsislasa 133
                         a p  s++  +s+k++++++ ve + ++++ ++++sp+s+ds+ + + 
  orange1.1g009335m 156 aAFPVRSVEspLSVKNCSVKASVECQPSVLRIDESLSPASFDSVVIPER 204
                        34444444435789*****************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.3E-4764208IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.16E-111243527IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.806.4E-127246533IPR013781Glycoside hydrolase, catalytic domain
PfamPF013732.7E-61270528IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.7E-32283297IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.7E-32304322IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.7E-32326347IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.7E-32419441IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.7E-32492511IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MNTIENIDEN PNQELLTQPP TQTQNQTQSH SRRPRGFAAT AAAAAAAAAA NNNSNSNNNN  60
ASSGKGKKER EKEKERTKLR ERHRRAITSR MLAGLRQYGN FPLPARADMN DVLAALAREA  120
GWTVEPDGTT YRLSNQSQSH HHLHQQMAAA AATTTAAFPV RSVESPLSVK NCSVKASVEC  180
QPSVLRIDES LSPASFDSVV IPERDSRGGE FNASTSPINN SVECLEADQL IQDVRAGEHE  240
DDFTGTPYIP VYVMLANHVI NNFCQLVDPE LIRQEISHMK ALNVDGVIVN CWWGIVEGWN  300
PQKYAWSGYR ELFNIIREFN LKVQVVMAFH EYGANDSGDA WISLPQWVME IGKGNQDIFF  360
TDREGRRNTE CLSWGVDKER VLNGRTGIEV YFDFMRSFRT EFDDLFVAGL ICAVEIGLGP  420
SGELKYPSLS ERMGWRYPGI GEFQCYDRYL QQSLRKAAKL RGHSFWARGP DNAGQYNSLP  480
HETGFFCERG DYDSYYGRFF LNWYAQTLID HADNVLSLAS LAFEETKIIV KVCMELS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bfn_A1e-9124853711297BETA-AMYLASE
1q6c_A1e-9124853711297beta-amylase
1q6g_A1e-9124853711297beta-amylase
1uko_A1e-9124853711297Beta-amylase
1uko_B1e-9124853711297Beta-amylase
1uko_C1e-9124853711297Beta-amylase
1uko_D1e-9124853711297Beta-amylase
1ukp_A1e-9124853711297Beta-amylase
1ukp_B1e-9124853711297Beta-amylase
1ukp_C1e-9124853711297Beta-amylase
1ukp_D1e-9124853711297Beta-amylase
1v3i_A1e-9124853711297Beta-amylase
1wdp_A1e-9124853711297Beta-amylase
1wdr_A1e-9124853711297Beta-amylase
1wds_A1e-9124853711297Beta-amylase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.105700.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1396980.0JX139698.1 Citrus trifoliata beta-amylase 7 (BAM7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432891.10.0beta-amylase 8
RefseqXP_006494107.10.0beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A067DQ010.0A0A067DQ01_CITSI; Beta-amylase
STRINGXP_006494107.10.0(Citrus sinensis)
STRINGXP_006432891.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]