 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
orange1.1g008153m |
| Common Name | CISIN_1g008153mg, LOC102629959 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
GRAS |
| Protein Properties |
Length: 577aa MW: 63477.3 Da PI: 4.8416 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g008153m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 456.7 | 1.5e-139 | 206 | 568 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
lv++L++cAea+++++l+ a+al++++ la+ ++ +m+++a+yf+eALa+r++r +y p++ +++ + l+ f+e++P+lk
orange1.1g008153m 206 LVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYR----IY----PQDCLDSSYNDILQ--MHFYETCPYLK 287
689****************************************************....44....34433223444433..36********* PP
GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
f+h+taNqaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +v++
orange1.1g008153m 288 FAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCN 379
******************************************************************************************** PP
GRAS 185 rledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
+l+dle+++L+++p E++aVn+v++lhrll++++ +e+ v++ +k ++Pk++++veqea+hns+ Fl+rf+eal+yys+lfdsle +
orange1.1g008153m 380 SLADLEPDMLDIRPpeVETVAVNSVFELHRLLARPGGIEK----VVSSIKAMRPKIITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGS 467
**************9999*********************9....*********************************************777 PP
GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdr 365
+ ++++++++++lgr+i+n+vac g++r+erhetl +Wr rl++aGF+pv+l+++a+kqa++ll+ ++ +dgyrvee++g+l+lgW++r
orange1.1g008153m 468 GLTPPSQDQVMSEVYLGRQICNIVACDGTDRNERHETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLALFAgGDGYRVEENNGCLMLGWHTR 559
556668889999999***************************************************************************** PP
GRAS 366 pLvsvSaWr 374
pL+++SaW+
orange1.1g008153m 560 PLIATSAWQ 568
********6 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 577 aa
Download sequence Send
to blast |
MKRDHQHSYG GGSGSGKGDY SSSTGNANKA KMWEEEQDTG GMDELLEVLG YKVRSSEMAD 60
VAQKLEQLEM VMGTAQEDGI SHLATDTVHY NPSDVSGWVQ SMLEGLNNTG FDSQARPIQD 120
PAESSTVNSI LGQQTSNQSR IFNDDSEYDL RAIPGSAAYP QPDSETENNR NKRMRVEINT 180
ANTNTIIPTE LARPVVVDSQ ETGVQLVHTL MACAEAIQQE NLKVADALVK HIGLLAAAQA 240
GAMRKVATYF AEALARRIYR IYPQDCLDSS YNDILQMHFY ETCPYLKFAH FTANQAILEA 300
FNNANRVHVI DFSLKQGMQW PALMQALALR PGGPPAFRLT GIGPPQPDNT DALQQVGWKL 360
AQLADTIGVE FEFRGFVCNS LADLEPDMLD IRPPEVETVA VNSVFELHRL LARPGGIEKV 420
VSSIKAMRPK IITIVEQEAN HNSPVFLDRF TEALHYYSSL FDSLEGSGLT PPSQDQVMSE 480
VYLGRQICNI VACDGTDRNE RHETLTQWRT RLGSAGFEPV HLGSNAYKQA SMLLALFAGG 540
DGYRVEENNG CLMLGWHTRP LIATSAWQLA KSTLVS*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}. |
