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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g007660m | ||||||||
Common Name | CISIN_1g007660mg, LOC102607441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | TALE | ||||||||
Protein Properties | Length: 595aa MW: 66302.1 Da PI: 6.7926 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.2 | 6.8e-09 | 513 | 551 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA+k gLt +qV++WF N R + orange1.1g007660m 513 MFQNflHPYPKDAEKHLLAMKSGLTRTQVSNWFINARVR 551 5887779******************************88 PP | |||||||
2 | BELL | 84.7 | 1.1e-27 | 384 | 454 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rq++++kka+Ll ll++Vd+rY+q+ ++++tv+s+F+a+++l++ ++++++Al++iS+ +++L+++i++qi orange1.1g007660m 384 QRQAVEAKKAQLLALLQMVDDRYNQCLDEIHTVVSAFHAATELDP-QVHARFALHTISFLYKNLRERISSQI 454 6899*****************************************.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 7.5E-30 | 303 | 452 | IPR006563 | POX domain |
Pfam | PF07526 | 8.2E-27 | 309 | 451 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.175 | 492 | 555 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.5E-6 | 495 | 559 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.64E-11 | 495 | 556 | No hit | No description |
SuperFamily | SSF46689 | 1.88E-15 | 496 | 562 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-26 | 498 | 561 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 9.8E-15 | 512 | 551 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0090470 | Biological Process | shoot organ boundary specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 595 aa Download sequence Send to blast |
MENDMFNNPI NRASRYSILV DGTPNSLIRT SSFNFDSQKH PDPALAGFPS FSALQGEPIS 60 DIHTNLNVTN NSRVFDSDAL VTSLGRNGMR DFSVGRSGPM DNINFQEQLE DGTPISSTSF 120 ATLLAARNGL QENLNNLAIS VPSIYPVDVL RNDIANHCSN DLNSSFETSA SCGYDEVLGN 180 VNSKWVFDEA HAAPKFDGKT LLRTGFQPYS SIGSLHPSEW ISSNDADVTA NRYGSSNYSN 240 ELSLSLATYH TAITGGNNIP DQCSEVSFSG ATHRCLNATR LCSEQASCSS NELSLSFGSH 300 RPAHFLQFIS GSTYLHAVQE ILAQIASYSL ENLDDMSYLG VRKIGDNIPP SSSFITGKGR 360 PPMNSDEFPN VDGCFEVQMN PSQQRQAVEA KKAQLLALLQ MVDDRYNQCL DEIHTVVSAF 420 HAATELDPQV HARFALHTIS FLYKNLRERI SSQILAMGAH FDSKSTRGKD TVMVDSFIKE 480 QWALQQLKKK EHQIWRPQRG LPEKSVSVLR AWMFQNFLHP YPKDAEKHLL AMKSGLTRTQ 540 VSNWFINARV RLWKPMIEEM YREVNRRKAQ GSKEGIDSSR RSQISISNQR FNMN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 6e-15 | 501 | 562 | 5 | 66 | Homeobox protein Meis2 |
3k2a_B | 6e-15 | 501 | 562 | 5 | 66 | Homeobox protein Meis2 |
4xrs_A | 5e-15 | 501 | 558 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 5e-15 | 501 | 558 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Down-regulated in the shoot apical meristem (SAM) upon floral induction. {ECO:0000269|PubMed:17908157}. | |||||
Uniprot | TISSUE SPECIFICITY: Most abundant in flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094559 | 3e-38 | BT094559.1 Soybean clone JCVI-FLGm-18H4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015385015.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_015385016.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_024952981.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_024952982.1 | 0.0 | homeobox protein ATH1 | ||||
Swissprot | P48731 | 1e-115 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | A0A067GMY9 | 0.0 | A0A067GMY9_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PZ72 | 0.0 | A0A2H5PZ72_CITUN; Uncharacterized protein | ||||
STRING | XP_006475948.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8228 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 1e-107 | homeobox gene 1 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g007660m |
Entrez Gene | 102607441 |
Publications ? help Back to Top | |||
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