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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
orange1.1g006986m |
Common Name | CISIN_1g006986mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
GRAS |
Protein Properties |
Length: 623aa MW: 68586.1 Da PI: 4.9343 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g006986m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 343.4 | 3.9e-105 | 255 | 622 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93
+++L++cA v+s + +a + L rl+ + +g+p++R+a yfteAL +rl++ + k++++ e++ ++ + ++k++++++P+ kf
orange1.1g006986m 255 TKALIDCACLVES-EPDKAVKSLVRLRGSVCAHGNPTERVAYYFTEALYKRLTQ---RAEKSITTLEAN---CEDCILSFKTLNDACPYSKF 339
689******9998.5677788899*****************************9...555555555555...999***************** PP
GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
++ltaNqaIlea+e+++++Hi+Df+i qG+QW LlqaLa+Rp g+p ++Ri g+ +p+ g + +l +tg+rL++fA +l +++ef++ +
orange1.1g006986m 340 AYLTANQAILEATENASHIHIVDFGIVQGIQWSFLLQALANRPTGKPvKVRISGIPAPALGksPAASLLATGDRLREFAGSLSLNLEFEP-I 430
*******************************************87777*********9999889999***********************.6 PP
GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
+ +l+ +++rv+p+Eal+Vn++lql +lld++ + + L++ ksl+P vv+++e ea++n++ Fl+rf +al+yy+a+f+sle +
orange1.1g006986m 431 LIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVE---NALQMAKSLNPIVVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPN 519
889*****************************87766555...8************************************************ PP
GRAS 275 lpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWk 363
+ ++s+er vEr++lg++i n++a e++ +rer e e+Wr +e++ F+ +p+s++a +qa+ ll +++ s ++++++++ l+ l Wk
orange1.1g006986m 520 MTTDSDERFQVERQILGPRIANLLAPEKQGaKRERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNySPLFTLNQSHDNLLtLSWK 611
*************************9998769****************************************999****987666555**** PP
GRAS 364 drpLvsvSaWr 374
+ pL++vS+Wr
orange1.1g006986m 612 KVPLLTVSSWR 622
**********8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 623 aa
Download sequence Send
to blast |
MAYMCADSGN LMAVAQQVIK QKQEQEKQQQ QQQQQQHQQN SDQPQQQFFG LNPYSLNPWT 60 SSSQHSISVS NSPNFGYGFT GPGFPDPLDT GESGFPFPQI DHHSTSGGFR FSDFGGGPGG 120 EFDSDEWMES LMNTAHSTDS SNLPPACDAW QNNASDFGLY ATDPFTSCPS QLGSPTSELN 180 RVVFADSQKT ILPAWPPSPP PPLVPPESAV KELAKQVSPS PSPSPSPSRV PPPNDAVGAS 240 TSTGFAEAEL AQPLTKALID CACLVESEPD KAVKSLVRLR GSVCAHGNPT ERVAYYFTEA 300 LYKRLTQRAE KSITTLEANC EDCILSFKTL NDACPYSKFA YLTANQAILE ATENASHIHI 360 VDFGIVQGIQ WSFLLQALAN RPTGKPVKVR ISGIPAPALG KSPAASLLAT GDRLREFAGS 420 LSLNLEFEPI LIPIRKLRAS SFRVDPNEAL VVNFMLQLNS LLDDNRLAVE NALQMAKSLN 480 PIVVTLAEYE ANLNRTGFLA RFKNALKYYT AVFESLEPNM TTDSDERFQV ERQILGPRIA 540 NLLAPEKQGA KRERVEDIEN WRIFMENSDF EGIPFSHYAL SQAEILLWNY NYSPLFTLNQ 600 SHDNLLTLSW KKVPLLTVSS WR*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |