PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g006925m
Common NameCISIN_1g006925mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 626aa    MW: 69425.2 Da    PI: 6.2301
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g006925mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.63.9e-2969153187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW++qe+laL+++r++m+ ++r+++ k+plWee+s+k+ e g++rs+k+Ckek+en+ k++k++k++++++  ++ +t+++fdqlea
  orange1.1g006925m  69 RWPRQETLALLKIRSDMDVAFRDASVKGPLWEEISRKLGELGYHRSAKKCKEKFENVFKYHKRTKDSRSSK--GQGKTYRFFDQLEA 153
                        8********************************************************************95..77778*******85 PP
2trihelix107.58.7e-34447532187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW+k ev aLi++r++++++++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  orange1.1g006925m 447 RWPKVEVEALIKMRTSLDSKYQENGPKGPLWEEISAGMRRLGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 532
                        8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.0E-566128IPR001005SANT/Myb domain
PROSITE profilePS500907.09768126IPR017877Myb-like domain
CDDcd122032.10E-2468133No hitNo description
PfamPF138379.8E-1968153No hitNo description
PROSITE profilePS500907.282440504IPR017877Myb-like domain
SMARTSM007173.5E-4444506IPR001005SANT/Myb domain
CDDcd122034.55E-28446511No hitNo description
PfamPF138375.7E-23446533No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MLVGEASVSG DLAAATTATA TATATVAARE AENEGGGEAA GSIFGSSNSG EDDKSRVLDE  60
AERGFGGNRW PRQETLALLK IRSDMDVAFR DASVKGPLWE EISRKLGELG YHRSAKKCKE  120
KFENVFKYHK RTKDSRSSKG QGKTYRFFDQ LEAFEHHHPP QLQSPSLKPH QASVSAAAVS  180
VAMPAANNPP SSTTIVPSTT TQHITVPHLT NLTSSGAIPS FPSAAATNPT NLPPPQATTN  240
YPSQSNIPSS FHNISPDLPS NSTSSSTSSD LELEGRRNKK RKWRDFFERL MKQVVDKQEE  300
LQMKFLEAIE KREHERMVRE EAWRMQEMTR INREREILGQ ERSIASAKDA AVMAFLQKLA  360
EQQNPGSQVV ISTSNNSIPA PPIILPPVPA PAPVQSQPPP LQPISTPASA PPPPPPHQQQ  420
PVFSIERTKT DNGGERNNYT GGTSSSRWPK VEVEALIKMR TSLDSKYQEN GPKGPLWEEI  480
SAGMRRLGYN RSSKRCKEKW ENINKYFKKV KESNKKRPED SKTCPYFHQL DALYKERNKL  540
ETSSSVLSNQ LLKPENSVPL MVRPEQQWPP QPEHQQDDQA MEDIESDQNV EEDDKDGDDD  600
EEEDDGGGFE IVPNNKPVNS MDANE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275281RRNKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.98100.0stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434455.10.0trihelix transcription factor GT-2
TrEMBLA0A067H7R90.0A0A067H7R9_CITSI; Uncharacterized protein
STRINGXP_006434455.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-67Trihelix family protein