PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g005787m
Common NameCISIN_1g0037662mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 678aa    MW: 75031.4 Da    PI: 7.5584
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g005787mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix461.3e-147563687
           trihelix 36 kkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                       +k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f+qlea
  orange1.1g005787m  7 RKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFTQLEA 56
                       7899*******************************866665..*******85 PP
2trihelix103.91.2e-32405490187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW+k evlaLi++r+ +e+r++++  k+plWee+s  m++ g++r++k+Ckekwen+nk++kk+ke++k+r +e+ +tcpyf++l+a
  orange1.1g005787m 405 RWPKVEVLALIKLRSGLEHRYQEAGPKGPLWEEISVGMQRMGYNRNAKRCKEKWENINKYFKKVKESNKRR-PEDAKTCPYFHELDA 490
                        8********************************************************************97.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-9757No hitNo description
PROSITE profilePS500906.528398462IPR017877Myb-like domain
PfamPF138374.1E-22404491No hitNo description
CDDcd122031.71E-29404469No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MGARGGRKLA ELGYKRSAKK CKEKFENVHK YYKRTKEGRA GRQDGKSYKF FTQLEALHSS  60
PTSTSTSTAT TSNVSASLPK PMTTVADTST LDVAPVSVGI PMPISSSVRI PTSPITLTCF  120
PYHDLRSTLI PAPSSAVNVP GSVTTPVPPT ATTSTTPVGI SFSSKSSSSS PETEDDDDDV  180
MDFEGQPSNT AGTSNRGRNR KRKRQTSSSH RMMAFFEGLM KQVMQKQEAM QQSFLEVIEK  240
RERDRMIREE AWKRQEMSRL AREHELMAQE RAISASRDAS IINFLQKITG QTIQLPPAIT  300
IPAAPPPPPP QPQSPSQAVP VATNTTQSHH MPPPERRDIQ QHHHRHQQIQ SSAAEAVTAR  360
HQQPSGTVST SIHSQVVMAV PEQQVPPSDH QEIGSGGNLE PASSRWPKVE VLALIKLRSG  420
LEHRYQEAGP KGPLWEEISV GMQRMGYNRN AKRCKEKWEN INKYFKKVKE SNKRRPEDAK  480
TCPYFHELDA LYRKKIIGVG GTSTSSQNRP EERHQSQSEQ QHQQENVNPV TNPQESSINV  540
LPAPLLITQA HSDSENKNGN AQASNVGVTG SLFGEGNLGA SKKPEDIVKE LMNQQGTQQK  600
QQQPQASIVD DQFDKVEESN MGSESDNMEY EEEDEREDDE ESEEDSNKMA NYKVEFQRQN  660
TSNGGGNGAP SFLAMVQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11422KRSAKKCKE
2196204GRNRKRKRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439158.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLA0A067GN190.0A0A067GN19_CITSI; Uncharacterized protein
STRINGXP_006439158.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-49Trihelix family protein