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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g005491m | ||||||||
Common Name | CISIN_1g005491mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ARF | ||||||||
Protein Properties | Length: 695aa MW: 77864.9 Da PI: 7.0706 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.7 | 1.1e-23 | 123 | 222 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f kvlt sd++++g +++ +k+a+e+ +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + orange1.1g005491m 123 FSKVLTASDTSTHGGFSVLRKHATEClppldMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RG 212 88****************************9445555669************************************************..44 PP SEE..EEEEE CS B3 88 sefelvvkvf 97 +++el+v+v+ orange1.1g005491m 213 ENGELHVGVR 222 99999**996 PP | |||||||
2 | Auxin_resp | 106.4 | 3.1e-35 | 249 | 332 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPr..astseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F v+Y+Pr + ts+F+++++k+++a+++k++vGmR+km+fe+eds+err+sGtvvgv+d++p +W++SkWrsLk orange1.1g005491m 249 ASHAVATQTMFVVYYKPRiiTRTSQFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSP-HWKDSKWRSLK 332 789***************44478**************************************************.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-42 | 114 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-38 | 117 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.89E-21 | 121 | 223 | No hit | No description |
Pfam | PF02362 | 3.2E-21 | 123 | 222 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.153 | 123 | 225 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-21 | 123 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.7E-32 | 249 | 332 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.0E-13 | 560 | 671 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.35E-14 | 577 | 658 | No hit | No description |
PROSITE profile | PS51745 | 26.665 | 582 | 663 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 695 aa Download sequence Send to blast |
MANRLGSLSQ PSSNSDDLYR ELWKACAGPL VDVPKQGQRV YYFPQGHMEQ LEASTNQELN 60 QRIPLFRLPS KILCRVVNIH LMAEQETDEV YAQITLLPEP SQNEPTTPDP CPADSPRPKV 120 HSFSKVLTAS DTSTHGGFSV LRKHATECLP PLDMNQSTPT QELVAKDLHG YEWRFKHIFR 180 GQPRRHLLTT GWSTFVTSKR LVAGDTFVFL RGENGELHVG VRCLARQQSS MPSSVISSQS 240 MHLGVLATAS HAVATQTMFV VYYKPRIITR TSQFIISLNK YLEAVNNKFA VGMRYKMRFE 300 GEDSPERRFS GTVVGVEDFS PHWKDSKWRS LKVQWDEPAS ITRPDRVSPW EIEPFVASAT 360 PNLVQPVLAK NKRPRLSMEV PPLDLPSAAS APWSARLAQS HNLTQLSVTA EDKRIDNHVA 420 WHHKHSDFSS NSNFMSRTQS DGEWLTSPRV KFSQQLFQEA IDDNKNISAW PAHSGHSTPH 480 PSKPNNDTLL EQVETGRKTE TGTSCRLFGI ELINHATSSA PSEKVPVSSL TTEGHIISTI 540 SAAADSDGKS DIAKEFKEKK QEQVQVSPKE SQSKQSCLTS NRSRTKVQMQ GVAVGRALDL 600 TTLVGYDHLI DELEEMFDIK GQLHTRTKWE IVYTDDEGDM MLVGDDPWHE FCNMVKRIFI 660 CSSQDVKKMS PGSKLPMFSI EGEDILLSSD SAEK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-173 | 15 | 355 | 16 | 355 | Auxin response factor 1 |
4ldw_A | 1e-173 | 15 | 355 | 16 | 355 | Auxin response factor 1 |
4ldw_B | 1e-173 | 15 | 355 | 16 | 355 | Auxin response factor 1 |
4ldx_A | 1e-173 | 15 | 355 | 16 | 355 | Auxin response factor 1 |
4ldx_B | 1e-173 | 15 | 355 | 16 | 355 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024044180.1 | 0.0 | auxin response factor 9 isoform X1 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A067GAH0 | 0.0 | A0A067GAH0_CITSI; Auxin response factor | ||||
STRING | XP_006476350.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2764 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g005491m |