PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g005246m
Common NameCISIN_1g001759mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CAMTA
Protein Properties Length: 707aa    MW: 78819.5 Da    PI: 6.3631
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g005246mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.53.4e-55201363118
               CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                        +e + rwl+++ei++iL n++k++lt +++ rp+ gsl+L++rk +ryfrkDG+ w+kkkdgktv+E+hekLK g+++vl+cyYah+e+n++
  orange1.1g005246m  20 QEaQYRWLRPTEICEILRNYQKFHLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEDNEN 111
                        55599*************************************************************************************** PP

               CG-1  94 fqrrcywlLeeelekivlvhylevk 118
                        fqrr+yw+L+ +le+ivlvhy+evk
  orange1.1g005246m 112 FQRRSYWMLDGQLEHIVLVHYREVK 136
                        **********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.85715141IPR005559CG-1 DNA-binding domain
SMARTSM010766.9E-7918136IPR005559CG-1 DNA-binding domain
PfamPF038592.5E-4921134IPR005559CG-1 DNA-binding domain
CDDcd001020.00126440528No hitNo description
PfamPF018337.0E-7441526IPR002909IPT domain
SuperFamilySSF812961.71E-17441527IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.101.8E-6441531IPR013783Immunoglobulin-like fold
SuperFamilySSF484036.37E-11606694IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.9E-9626693IPR020683Ankyrin repeat-containing domain
CDDcd002041.03E-8633700No hitNo description
PROSITE profilePS5029713.788635700IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MAQTRRYVPN QQLDLEQILQ EAQYRWLRPT EICEILRNYQ KFHLTPDPPV RPPAGSLFLF  60
DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKAGSIDVLH CYYAHGEDNE NFQRRSYWML  120
DGQLEHIVLV HYREVKEGYK SGRSAADPGS QIESSQTSSA RSLAQANSSA PAAQTSHASI  180
PNKIDWNGQA VSSEFEDVDS GHGSGTPSVA QSIYGSMSQN ASLVAASIAG LPELSRHPQW  240
FAGSKINHGS GSSMWPQIDN SSRNATSVLD QHGHQNFYVG QPSGADFITH KLTDARLASD  300
STIANIGTCG ERLITDIDVH AVTTSSQGAS QVLLEHNFNL INNQCQNCPV PEVTVASVSQ  360
AGIKPKEELG ELKKLDSFGR WMDQEIGGDC DDSLMASDSG NYWNTLDAEN DDKEVSSLSH  420
HMQLEMDSLG PSLSQEQLFS IRDFSPDWAY SGAETKVLII GMFLGTKKLS SDTKWGCMFG  480
EIEVPAEVLT DNVIRCQAPS HAAGRVPFYI TGSNRLACSE VREFEYREKP SKAGYPVASK  540
IAPEDEVRLQ TRLAKFLYLD PERKWFDCTI EDCNKCKLKN TIYSMRGDSE KDWGRVDESP  600
MAIEGDCPNS RDKLIQNLLR NRLCEWLVWK IHEGGKGPNV IDDGGQGVVH LAAALGYEWA  660
MRPIIATGVS PNFRDARGRT ALHWASYFGR LGCYLEVLIK FLIYIL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488760.10.0calmodulin-binding transcription activator 3-like isoform X1
RefseqXP_006488761.10.0calmodulin-binding transcription activator 3-like isoform X1
RefseqXP_024033801.10.0calmodulin-binding transcription activator 3 isoform X1
RefseqXP_024033834.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLA0A067FXQ60.0A0A067FXQ6_CITSI; Uncharacterized protein
STRINGXP_006488760.10.0(Citrus sinensis)
STRINGXP_006419272.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.21e-156signal responsive 1