PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g005229m
Common NameCISIN_1g005229mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 708aa    MW: 81205.8 Da    PI: 7.4976
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g005229mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-19638687255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +++GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a+++a+++++g
  orange1.1g005229m 638 HFRGVRQRP-WGKWAAEIRDPK----KaARIWLGTFDTAEAAALAYDEAALRFKG 687
                        58*******.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579974.91E-913244No hitNo description
PfamPF078992.9E-36370520IPR012474Frigida-like
SMARTSM003803.8E-38638701IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-31638696IPR001471AP2/ERF domain
PROSITE profilePS5103224.816638695IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-21638696IPR016177DNA-binding domain
PfamPF008477.1E-13638687IPR001471AP2/ERF domain
CDDcd000181.94E-20638696No hitNo description
PRINTSPR003672.5E-10639650IPR001471AP2/ERF domain
PRINTSPR003672.5E-10661677IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MVSWRVEKIM GLGQKRIGEF NCELELKENE LNSLSVSLNL KNKPSSAQEW INKCQAYQKE  60
LRLWKNLIEE CYDEVELREK KVGEAQRSIE EQEKQLAFKE SKISSMQTLI EENEGLLKDK  120
EKLYDEVKNS LMLCETKLEC EKKELELTQS SIKELSMEFH SEEEKLELLQ GKVRLHENEV  180
ESLEQKLDSM RKQQKKYFDD VELKKRELNE IRKYIEELNQ DPASKDKELR FVQQSIEECS  240
KEIPGKKEEL ISKGKTIAEC SKEVELKKNQ LNLIQDKSSL FQTRTIVYLK ELKEKETHFD  300
SLKKGLEDRL QDLELKEREF EKRVKEFELR EKELDSIRKA VEDRSKNLLL QVKIKDPENL  360
TSSGRYLQFL LNQHLQKHDS IFCKVFDTIK SARDPALLVL HAMSGFYPPH SREGDLEFDV  420
SIVRRSCILL LEQLSTVEPE INAQVRDEAM KVAGEWKKKM RVAVENSLEV LGFLHLLAAY  480
RLAPAFDREE LESLLCIVAQ HRQTPKLRRT LGFADKVPGL QCSTTAEGRS APSMLVGTSA  540
PLNQSVSSPM NLPQCSGMDP NSSTSSLVSQ YSGAQPQLEN QYKRLRRESP STIAYTPQTP  600
ASDNLSRSSL ATQYGPGVAH IGGQTQFGLL AGNVSRMHFR GVRQRPWGKW AAEIRDPKKA  660
ARIWLGTFDT AEAAALAYDE AALRFKGRKA KLNFPERVQA NLTTHLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-25638698263ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006471819.10.0sodium channel and clathrin linker 1-like isoform X2
RefseqXP_024039696.10.0sodium channel and clathrin linker 1
TrEMBLA0A067DU430.0A0A067DU43_CITSI; FRIGIDA-like protein
STRINGXP_006471819.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1273824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.12e-27related to AP2 6l