PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SBP

Protein Properties

Length: 712aa MW: 78682.7 Da PI: 8.4659

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g005162m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.7	5.1e-41	172	249	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe hsk++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ orange1.1g005162m 172 MCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 249 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.6E-34	168	234	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.855	170	247	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.01E-37	171	252	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	9.5E-30	173	246	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 712 aa Download sequence Send to blast
MEEVGAQVAP SILMHQRLSS RLCEAPTMTM TMTMAKKRHL SYQAQSQNHY GGEQQNWNPK 60 LWDWDSVGFV GKPVVDSDPE VLRLGGATAS ESPNKTTDNI NYNYNYNNQK KGNTTTTSAV 120 TVGNVEDDGR LDLNLGGGLT AVDVEQPEPP VVTSKPNKRV RSGSPGTAPY PMCQVDNCKE 180 DLSNAKDYHR RHKVCELHSK STKALVGKQM QRFCQQCSRF HPLSEFDEGK RSCRRRLAGH 240 NRRRRKTQPE DITSRMLIHG HGNQSNNPTA NVDIVNLLTA LARAQGKTED RSISCSSVPD 300 REQLLMILSK INSLPLPADL AAKLHNFGSL NRKTPVHTST DVQNRLNENT SSPSTMDLLA 360 VLSSTLTAPS PDTLAAHSQR SSHSSDSEKT KSTCPEQATP NFLKRTTMDF PSVGGERSST 420 SYQSPVEDSD GQNQETRVNL PLQLFSSSPE DDSPPKLSSS RKYFSSDSSN PIEERSPSSS 480 PVVQTFFPMQ STSETVKSEK LSIGREVNAN VEGNRSRGSI MPLELFRGSN KAADNCSFQS 540 FPYQAGYTSS SGSDHSPSSL NSDAQDCTGR IIFKLFDKDP SQFPGTLRKE IYNWLSNSPS 600 EMESYIRPGC VILSLYVSMP YATWEQLEGN LLQRINSLVQ DSDSDFWRNA RFLVHTGKQL 660 ASHKDGNIRV CKSWRTWSSP ELISVSPLAV VGGQELSFKL RGRNLTNLGT K*

Sequence ? help Back to Top

Protein Sequence Length: 712 aa Download sequence Send to blast

MEEVGAQVAP SILMHQRLSS RLCEAPTMTM TMTMAKKRHL SYQAQSQNHY GGEQQNWNPK  60
LWDWDSVGFV GKPVVDSDPE VLRLGGATAS ESPNKTTDNI NYNYNYNNQK KGNTTTTSAV  120
TVGNVEDDGR LDLNLGGGLT AVDVEQPEPP VVTSKPNKRV RSGSPGTAPY PMCQVDNCKE  180
DLSNAKDYHR RHKVCELHSK STKALVGKQM QRFCQQCSRF HPLSEFDEGK RSCRRRLAGH  240
NRRRRKTQPE DITSRMLIHG HGNQSNNPTA NVDIVNLLTA LARAQGKTED RSISCSSVPD  300
REQLLMILSK INSLPLPADL AAKLHNFGSL NRKTPVHTST DVQNRLNENT SSPSTMDLLA  360
VLSSTLTAPS PDTLAAHSQR SSHSSDSEKT KSTCPEQATP NFLKRTTMDF PSVGGERSST  420
SYQSPVEDSD GQNQETRVNL PLQLFSSSPE DDSPPKLSSS RKYFSSDSSN PIEERSPSSS  480
PVVQTFFPMQ STSETVKSEK LSIGREVNAN VEGNRSRGSI MPLELFRGSN KAADNCSFQS  540
FPYQAGYTSS SGSDHSPSSL NSDAQDCTGR IIFKLFDKDP SQFPGTLRKE IYNWLSNSPS  600
EMESYIRPGC VILSLYVSMP YATWEQLEGN LLQRINSLVQ DSDSDFWRNA RFLVHTGKQL  660
ASHKDGNIRV CKSWRTWSSP ELISVSPLAV VGGQELSFKL RGRNLTNLGT K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-32	163	246	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in vasculature of aerial parts. Expressed in cotyledons and leaf petioles. {ECO:0000269\|PubMed:15703061}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00155	DAP	Transfer from AT1G20980	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435483.1	0.0	squamosa promoter-binding-like protein 14 isoform X1
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A067GZY7	0.0	A0A067GZY7_CITSI; Uncharacterized protein
STRING	XP_006435483.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Link Out ? help Back to Top
Phytozome	orange1.1g005162m

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]