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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g004978m | ||||||||
Common Name | CISIN_1g004975mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Nin-like | ||||||||
Protein Properties | Length: 722aa MW: 80035.1 Da PI: 6.0292 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.1 | 4.2e-29 | 625 | 675 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ orange1.1g004978m 625 EKTISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 675 79***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.507 | 614 | 695 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 7.1E-25 | 627 | 675 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 722 aa Download sequence Send to blast |
MDDGNFTPNP SFGAFPGTAM DLDFMDELLF DGCWLETTDA LDFLQPGPSS SGPADDTSQY 60 LPYSEGTTGH LSMNLNPQQQ VYQEETKNKF TENPSLVYPK IEEIQDTRTQ DHQGFDPATS 120 SGQSGSFLAQ GNELGRRWWI GPRENTGHSS SVKDRLMQAI IYLKDYIKDG KALVQIWVPI 180 NSGGKQLLTT DDQPYSLDPN SKSLESYRNV STTYHFAADE DSKEFVGLPG RVFREQSPEW 240 TPDVLFFRSE EYPRVNHAQQ YDVHGSLALP VFERGSGACL GVVEVVTTSR KINYRLDLEN 300 VCKALEAVDL RSSGNFSTSC VKARNELYHA AMPEIAEVLR SVCKTHKLPL ALTWAPCVQG 360 RKVECQQSDE NFPHCFLTVD SACFVANENL SGFFVACSEQ QLLQGQGIVG KAFSLSKQCF 420 TADITAFSKS NYPLSHLARM FGLRAAVAIP LRSITTGVVE FILEFFLPRE CQDIEEQKQM 480 VKSLSVAMQQ VCQSLRLAME KELEVVILPV GEMAVTSDGS SPSKETSQEQ SSWISHMIEA 540 QQKGKGVSVS WDHQEEPKEE FKMTTHWDDA RAESFHKEVF PGFGQFQHNS GAKSSVEGGG 600 DSSSLGGHLS VGSRKAGEKR RTKTEKTISL QVLRQYFAGS LKDAAKSIGV CPTTLKRICR 660 QHGITRWPSR KIKKVGHSLR KLQLVIDSVQ GAEGAIQIGS FYTTFPDLNS PIFLGVVLFH 720 Q* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KX056268 | 0.0 | KX056268.1 Citrus trifoliata transcription factor NLP2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006486604.1 | 0.0 | protein NLP2 isoform X1 | ||||
Refseq | XP_015388283.1 | 0.0 | protein NLP2 isoform X1 | ||||
Refseq | XP_015388284.1 | 0.0 | protein NLP2 isoform X1 | ||||
Refseq | XP_024957954.1 | 0.0 | protein NLP2 isoform X2 | ||||
Swissprot | Q7X9B9 | 0.0 | NLP2_ARATH; Protein NLP2 | ||||
TrEMBL | A0A067FXZ8 | 0.0 | A0A067FXZ8_CITSI; Uncharacterized protein | ||||
STRING | XP_006486601.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35270.1 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g004978m |