PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g004294m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 764aa    MW: 83310.5 Da    PI: 5.9797
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g004294mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2091146156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  orange1.1g004294m  91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146
                        688999***********************************************999 PP
2START225.31.9e-702815011206
                        HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
              START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                        ela +a++el+++a+ +ep+W++s       +n+de++++f+++ +     ++ ea+r+++vv+m++  lve+l+d++ qW++ +     +a
  orange1.1g004294m 281 ELAVAAMEELIRMAQMGEPLWMTSLdgtaAVLNEDEYVRTFPRGIGpkptgFKCEASRETAVVIMNHISLVEILMDVN-QWSTVFSgivsRA 371
                        57899********************999999************999********************************.************* PP

                        EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
              START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                        +tlev+s+g      galq+m+ae+q++splvp R++++vRy++q+g+g+w++vdvS+d+ ++ p     vR++++pSg+li++++ng+skv
  orange1.1g004294m 372 MTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHGEGTWAVVDVSLDNLRPSPA----VRCRRRPSGCLIQEMPNGYSKV 459
                        ***************************************************************995....********************** PP

                        EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        twvehv++++r +h+l+++lv++g a+gak+wvatl+rqce+
  orange1.1g004294m 460 TWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCER 501
                        ****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-2370146IPR009057Homeodomain-like
SuperFamilySSF466892.09E-1979148IPR009057Homeodomain-like
PROSITE profilePS5007116.92588148IPR001356Homeobox domain
SMARTSM003891.2E-1989152IPR001356Homeobox domain
PfamPF000464.3E-1891146IPR001356Homeobox domain
CDDcd000862.71E-1991149No hitNo description
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
PROSITE profilePS5084845.627272504IPR002913START domain
SuperFamilySSF559619.89E-37272503No hitNo description
CDDcd088753.14E-131276500No hitNo description
SMARTSM002346.6E-66281501IPR002913START domain
PfamPF018521.4E-59282501IPR002913START domain
Gene3DG3DSA:3.30.530.207.6E-6376468IPR023393START-like domain
SuperFamilySSF559612.89E-23521755No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MPTGVMIPAR NMPSTIGRNG NVGGLGSSSG LTLSQPTNMM EGQLHPLDMT QNTSESEIAR  60
LREEEFDSTK SGSENHEGAS GDDQEQRPNK KKRYHRHTQH QIQEMEAFFK ECPHPDDKQR  120
KELSRELGLE PLQVKFWFQN KRTQMKTQHE RHENTQLRTE NEKLRADNMR YREALSNASC  180
PNCGGPTAIG EMSFDEHHLR LENARLREEI DRISAIAAKY VGKPVVNYPL LSPPVPSRPL  240
ELAVGNFGAQ PGIGGGEMYG AADLLRSISA PTEADKPMII ELAVAAMEEL IRMAQMGEPL  300
WMTSLDGTAA VLNEDEYVRT FPRGIGPKPT GFKCEASRET AVVIMNHISL VEILMDVNQW  360
STVFSGIVSR AMTLEVLSTG VAGNYNGALQ VMTAEFQVPS PLVPTRESYY VRYCKQHGEG  420
TWAVVDVSLD NLRPSPAVRC RRRPSGCLIQ EMPNGYSKVT WVEHVEVDDR GVHNLYKQLV  480
STGNAFGAKR WVATLDRQCE RLASVMATNI PTGEVGVITN QDGRKSMLKL AERMVISFCA  540
GVSASTAHTW TTLSGTGADD VRVMTRKSVD DPGRPPGIVL SAATSFWLPV PPKRVFDFLR  600
DENTRSEWDI LSNGGVVQEM AHIANGRDTG NCVSLLRVNC LQSANSSQSN MLILQESCTD  660
PTASFVIYAP VDIVAMNVVL NGGDPDYVAL LPSGFAILPD GTSLHGANIG EAASGGSLLT  720
VAFQILVDSV PTAKLSLGSV ATVNNLIACT VERIKASLSC ESA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015383007.10.0homeobox-leucine zipper protein HDG2 isoform X1
RefseqXP_024046027.10.0homeobox-leucine zipper protein HDG2 isoform X1
RefseqXP_024046028.10.0homeobox-leucine zipper protein HDG2 isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLV4W4610.0V4W461_9ROSI; Uncharacterized protein
STRINGXP_006469695.10.0(Citrus sinensis)
STRINGXP_006447537.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2