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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g003968m | ||||||||
Common Name | CISIN_1g003968mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | CPP | ||||||||
Protein Properties | Length: 784aa MW: 85847.2 Da PI: 5.8189 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.8 | 3.3e-16 | 487 | 525 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk orange1.1g003968m 487 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 525 689**********************************96 PP | |||||||
2 | TCR | 50.7 | 3.5e-16 | 572 | 611 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN+ orange1.1g003968m 572 RHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCEGCKNTF 611 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.5E-18 | 486 | 527 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.621 | 487 | 612 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.1E-11 | 489 | 524 | IPR005172 | CRC domain |
SMART | SM01114 | 8.7E-18 | 572 | 613 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.1E-11 | 574 | 610 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 784 aa Download sequence Send to blast |
MDTPKKATQM ATPLSKFEDS PVFNYINSLS PIKPVKSLPV TQTFNSLNFS SPPSIFTSPH 60 ISAHKETRFL RRNNCLGLSK PEFSSENGNK ICRNDGVAND ASQLYDNSAE LQENFDPRVS 120 MEEVSVEASN DSKFAIELPQ ALKYDCGSPG CDSNPCNIES NCMTEMASTS VSVVQFVQEA 180 SENGASEADV RLQRTCQMEQ KNEVTGCEWE SLISDAADLL IFNLPNDSED FKGLMQKSLD 240 SGGRYASVTP RYINGQPIME MIDPVGTDHQ NGMEHQSTQP GETSILNDEL DECFTGDPSE 300 NGVTAMGMSN PASCKPISNL HRGMLRRCLD FELVTRRKNA DGSSNYGSSV ILHSDEKFAS 360 EDKQLVPLKP GSDSPRCMVP GIGLHLNALA ITPQENKNIG IESLSSVRQI SLPGANASFH 420 SPENCEDPHH EPLTSASTER DIVAVENGVL LAEDASQTSA YLAEEEYNQN SPKKKRRRME 480 NAGENESCKR CNCKKSKCLK LYCECFAAGV YCIEPCSCQD CFNKPIHEDT VLATRKQIES 540 RNPLAFAPKV IRSSDSLPEV GEDTSKTPAS ARHKRGCNCK KSSCLKKYCE CYQGGVGCSI 600 NCRCEGCKNT FGRKDGSSST DPEAEPEDEE MEMCEKSGVD KRFQKTEFLS NEEQNPGSAL 660 PTTPLRLSRP LVQLPFSTKC KPPRSLLSIG SSSGFFTGHN YGKPNILRSQ PKFEKSLQTA 720 PEDEMPEILR GNCTPCSGIK TSSPNSKRVS PPHTILGSSP SRRSGRKLIL QSIPSFPSLT 780 PKH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 5e-17 | 491 | 609 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 5e-17 | 491 | 609 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 472 | 477 | KKKRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006489438.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A067G7A0 | 0.0 | A0A067G7A0_CITSI; Uncharacterized protein | ||||
STRING | XP_006489438.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1467 | 28 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-148 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g003968m |