PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g003787m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | SBP | ||||||||
Protein Properties | Length: 796aa MW: 88289.3 Da PI: 7.289 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 118 | 4.8e-37 | 130 | 207 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gCead+se+k yh+rh+vC +++a++vl++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k+ orange1.1g003787m 130 RCQVPGCEADISELKGYHKRHRVCLRCANASTVLLDGESKRYCQQCGKFHLLSDFDEGKRSCRRKLERHNNRRRRKSV 207 6*************************************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.4E-29 | 124 | 192 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.846 | 128 | 205 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.8E-34 | 129 | 208 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.4E-27 | 131 | 205 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055070 | Biological Process | copper ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 796 aa Download sequence Send to blast |
MERDGVERPR IPEMEVHPAM VTEADPSASA LWDWSDLLDF TTDDHFNLPL DPAQLELNPL 60 PELQPEPPVV NNLERVRKRD PRLTCSNFLA GRIPCACPEL DEMLEEQEAG LPGKKRARTV 120 RAGHGQGKAR CQVPGCEADI SELKGYHKRH RVCLRCANAS TVLLDGESKR YCQQCGKFHL 180 LSDFDEGKRS CRRKLERHNN RRRRKSVDSK GAVDSEPPGA SRCEDIICDD DSGKDSLCLS 240 SQITDQEAFL ESEDGLVSAL NSAPNTQNVK SDSGISAVAS GEIRTDRGKD DSKASLSPSN 300 CDNKSSYSSL CPTGRISFKL YDWNPAEFPR RLRHQIFHWL ASMPVELEGY IRPGCTILTV 360 FIAMPKIMWA KLYEDPIRYV HNFVVEPGTA SMLSGRGSMF VHLNNMIFHV KGGTSVVKVD 420 VKVQAPKLHY VQPSCFEAGK PLEFVACGSN LIQPKLRYVT YLPHDYCIVS PLGGSEGESL 480 ALEHQFYKIN VPHIEANLFG PAFIEVENES GLSNFIPVLI GDKGTCSEIN IIQQRFEASF 540 FSKRSQFMAS GLLSDLCEVS ALRQKALTEL LVDIAWLLKA PASESFRQTI SCSEVQRFNQ 600 LLSFLIYNES TTILEKMLQN MKILMNNIES NIAVNGISDS DMGLLLKYMD YARGILCQKV 660 KKDKGPMQHS GNIVPKMISS SQSCLQANSL VPSTKQDLVV RSNDKIGAVM GSATVDRCEV 720 VPLLNREVVM NVNLIKEWPR KSCSPIFSGR VLSSLPTVTV IAMAAVCFGV CLVVLHPQKV 780 GHFATSIRRS LFGNL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 8e-44 | 129 | 211 | 4 | 86 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 191 | 203 | RRKLERHNNRRRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots rosette leaves, cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:24335506}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that participates in reprogramming global gene expression during copper deficiency in order to improve the metal uptake and prioritize its distribution to copper proteins of major importance (Probable). Binds directly to 5'-GTAC-3' motifs in the microRNA (miRNA) promoter of the stress-responsive miRNAs miR398b and miR398c to activate their transcription. During copper deficiency, activates the copper transporters COPT1 and COPT2, and the copper chaperone CCH, directly or indirectly via miRNAs. Required for the expression of the miRNAs miR397, miR408 and miR857 (PubMed:19122104). Acts coordinately with HY5 to regulate miR408 and its target genes in response to changes in light and copper conditions (PubMed:25516599). Activates miR857 and its target genes in response to low copper conditions (PubMed:26511915). Involved in cadmium stress response by regulating miR397a, miR398b, miR398c and miR857 (PubMed:27352843). Required for iron homeostasis during copper deficiency (PubMed:22374396). {ECO:0000269|PubMed:19122104, ECO:0000269|PubMed:22374396, ECO:0000269|PubMed:25516599, ECO:0000269|PubMed:26511915, ECO:0000269|PubMed:27352843}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00604 | PBM | Transfer from AT5G18830 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006419724.1 | 0.0 | squamosa promoter-binding-like protein 7 isoform X1 | ||||
Swissprot | Q8S9G8 | 0.0 | SPL7_ARATH; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A2H5N768 | 0.0 | A0A2H5N768_CITUN; Uncharacterized protein | ||||
STRING | XP_006419724.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6358 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.1 | 0.0 | squamosa promoter binding protein-like 7 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g003787m |