PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g003684m
Common NameCISIN_1g003684mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 804aa    MW: 92229.9 Da    PI: 6.3956
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g003684mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.8e-20735783255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+WvAeIrdp+    ++r++lg+f+tae Aa a+++a+++++g
  orange1.1g003684m 735 QYRGVRQRH-WGKWVAEIRDPT----KARVWLGTFDTAEAAALAYDEAALRFYG 783
                        7*******9.**********94....4***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579975.45E-1192307No hitNo description
PfamPF078994.8E-35467616IPR012474Frigida-like
CDDcd000181.08E-19734792No hitNo description
SuperFamilySSF541714.32E-21735792IPR016177DNA-binding domain
PROSITE profilePS5103223.894735791IPR001471AP2/ERF domain
PfamPF008473.7E-13735783IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-31735792IPR001471AP2/ERF domain
SMARTSM003802.4E-38735797IPR001471AP2/ERF domain
PRINTSPR003673.7E-10736747IPR001471AP2/ERF domain
PRINTSPR003673.7E-10757773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MDNCTVNISE ELRVAESKKE ALRRSFDIAR SQSNSVPVFT GQWDDLEEHL DLTKKSLEKQ  60
SNDVDVKIRL LDQRAKEIES KEIELVLVGK KIEDCNGELA CKKKELGLVQ KRIGECKREL  120
QLKENELNSL SGSLNLKKEE LCSVQGWINK CQANQKELQL LKNLIKECCD EIELREKKVG  180
EVQRSIEEHE KQLAFKESKI SSMRTLIEEY EEVLKDKERP YDEVKKSLIL CETKLESEKK  240
ELELTQSSIK ELWMKFHSEQ EKLELLQGRV RLHENEVESL EQELDSMRKQ QKKYFDDVEL  300
KKRELNEIGK YIEELNQDPA SKDKELKFVQ QSIKECSKEF QWKKEESIST EKTIAECSKE  360
VELKKNQFNL TQHESNLFQT RTIGYLKELK EKEKHFDSLK KGLEDRLQDL EIKEREFEKR  420
VKEFELREKE FGSIRKAVED CSKNLLLQAK TEDPEKLTSS GRYLQFLLNQ HLQKHDSIFC  480
KVFDTIKSAR DPALLVLHAI SGFYPPHSRE GDLEFDVSII RRSCILLLEQ LSTVAPEINA  540
QVRDEAMKVA GEWKKKMRVA VENSLEVLGF LHLLAAYRLA PAFDGEELES LLRIVAQHRQ  600
TPKLRQTLGF ADKEPGLQCS TTAEGRSAPS MLVGTSAPTN QPDSSLMNLP QYSGMDPSNS  660
TSSPVSQFSG AQPQLENQYK RLRVESLSTI DYTPHALASD NLNRSSLATQ HGPGVDRIGG  720
QTQFGLLAGN VGIKQYRGVR QRHWGKWVAE IRDPTKARVW LGTFDTAEAA ALAYDEAALR  780
FYGCNAKLNF PERVQANLTT HLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-23734794163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.90403e-63callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006471811.10.0putative uncharacterized protein MYH16 isoform X1
TrEMBLA0A067DTM60.0A0A067DTM6_CITSI; FRIGIDA-like protein
STRINGXP_006433141.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1273824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.11e-20related to AP2 6l