PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g002869m
Common NameCISIN_1g002869mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 873aa    MW: 95367.6 Da    PI: 6.336
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g002869mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.57.3e-21135190156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  orange1.1g002869m 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190
                        688999***********************************************999 PP
2START48.23.2e-16342453193
                        HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
              START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                        ela++a++elvk+a+ +ep+W +s      + +n +e+l++f++  +     + +ea+r++g+v+ ++  lve+l+d + +W e+++    +
  orange1.1g002869m 342 ELALAAMDELVKMAQTDEPLWIRSFegsgrQVLNHEEYLRTFTPCIGlkpngFVTEASRETGMVIINSLALVETLMDPN-RWAEMFPcmiaR 432
                        5899********************99*99999***********99989*9*9***************************.************ PP

                        EEEEEEECTT......EEEEE CS
              START  79 aetlevissg......galql 93 
                         +t++vissg      galql
  orange1.1g002869m 433 TATTDVISSGmggtrnGALQL 453
                        **********98888877775 PP
3START133.52.3e-4249060394206
                        EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHH CS
              START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrsl 184
                        m aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++ +  + +v +++lpSg+++++++ng+skvtwveh++++++++h+l+++l
  orange1.1g002869m 490 MHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPL 581
                        889****************************************999********************************************** PP

                        HHHHHHHHHHHHHHHTXXXXXX CS
              START 185 vksglaegaktwvatlqrqcek 206
                        + sg+ +ga++wvatlqrqce+
  orange1.1g002869m 582 IISGMGFGAQRWVATLQRQCEC 603
                        ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.28E-20118192IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-21127192IPR009057Homeodomain-like
PROSITE profilePS5007117.248132192IPR001356Homeobox domain
SMARTSM003892.2E-17133196IPR001356Homeobox domain
CDDcd000862.06E-18134192No hitNo description
PfamPF000462.1E-18135190IPR001356Homeobox domain
PROSITE patternPS000270167190IPR017970Homeobox, conserved site
PROSITE profilePS5084841.339333606IPR002913START domain
SuperFamilySSF559617.69E-32335447No hitNo description
CDDcd088751.33E-119337602No hitNo description
PfamPF018521.6E-10342452IPR002913START domain
SMARTSM002343.3E-30342603IPR002913START domain
SuperFamilySSF559617.69E-32488603No hitNo description
PfamPF018521.3E-36490603IPR002913START domain
SuperFamilySSF559618.63E-24631865No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 873 aa     Download sequence    Send to blast
MSFGGFLENN ISTSSGGGGA RIVADISYTN NDNNNNNNMP TTTTLAHPRL LSSTPQPLSK  60
SMFNSPGLSL ALQQPNIDNQ GGGDLQLQRM GESFEGIIGR RSREDLLEHE SRSGSDNMDG  120
ASGDDLDAAD NPPRKKRYHR HTPQQIQELE SLFKECPHPD EKQRLELSKR LCLETRQVKF  180
WFQNRRTQMK TQLERHENSL LRQENDKLRA ENMSIRDAMR NPICTNCGGP AIIGDISLEE  240
QHLRIENARL KDELDRVCAL AGKFLGRPVS SMGPPPMPNS SLELGVGTIN GFGGLSSTVT  300
TTLPADFGTG ISNALPVVMP PNRSGPGVTG LDRSIERSMF LELALAAMDE LVKMAQTDEP  360
LWIRSFEGSG RQVLNHEEYL RTFTPCIGLK PNGFVTEASR ETGMVIINSL ALVETLMDPN  420
RWAEMFPCMI ARTATTDVIS SGMGGTRNGA LQLVEFYNSI INEHLINYFL LIILVYKKIK  480
IKLFFSFLEM HAELQVLSPL VPVREVNFLR FCKQHAEGVW AVVDVSIDTI RETSGAPAFV  540
NCRRLPSGCV VQDMPNGYSK VTWVEHAEYD ESQVHQLYKP LIISGMGFGA QRWVATLQRQ  600
CECLAILMST SVSARDHTAI TAGGRRSMLK LAQRMTDNFC AGVCASTVHK WNKLNAGNVD  660
EDVRVMTRKS VDDPGEPPGI VLSAATSVWL PVSPQRLFNF LRDERLRSEW DILSNGGPMQ  720
EMAHIAKGQD HGNCVSLLRA SAINANQSSM LILQETCTDA AGSLVVYAPV DIPAMHVVMN  780
GGDSAYVALL PSGFAIVPDG PDSRGPLANG PTSGNGSNGG SQRVGGSLLT VAFQILVNSL  840
PTAKLTVESV ETVNNLISCT VQKIKAALQC ES*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.12170.0fruit| vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445143.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
RefseqXP_006491020.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A067HDW50.0A0A067HDW5_CITSI; Uncharacterized protein
STRINGXP_006491020.10.0(Citrus sinensis)
STRINGXP_006445143.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]