PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g002476m
Common NameCISIN_1g002476mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CAMTA
Protein Properties Length: 918aa    MW: 103296 Da    PI: 7.3011
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g002476mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1163.24.5e-51251422118
               CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                        ++e k+rwl+++ei+aiL n + +++ +++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ p
  orange1.1g002476m  25 MEEaKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSP 116
                        55669*************************************************************************************** PP

               CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                        tf rrcywlL+++le+ivlvhy+e++
  orange1.1g002476m 117 TFVRRCYWLLDKTLENIVLVHYRETH 142
                        ***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.33621147IPR005559CG-1 DNA-binding domain
SMARTSM010761.0E-7424142IPR005559CG-1 DNA-binding domain
PfamPF038591.2E-4527140IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.109.2E-4364455IPR013783Immunoglobulin-like fold
PfamPF018331.1E-4366452IPR002909IPT domain
SuperFamilySSF812962.19E-14367453IPR014756Immunoglobulin E-set
CDDcd002046.67E-14551661No hitNo description
Gene3DG3DSA:1.25.40.201.1E-14552664IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.48E-15560665IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.769569634IPR020683Ankyrin repeat-containing domain
SMARTSM002489.8E-6602631IPR002110Ankyrin repeat
PROSITE profilePS5008811.033602634IPR002110Ankyrin repeat
PfamPF000235.7E-5602633IPR002110Ankyrin repeat
SMARTSM00015340712734IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.66E-7713816IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500966.797750776IPR000048IQ motif, EF-hand binding site
SMARTSM0001522765787IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.803766795IPR000048IQ motif, EF-hand binding site
PfamPF006120.23768786IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0011788810IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.487789813IPR000048IQ motif, EF-hand binding site
PfamPF006122.1E-4790809IPR000048IQ motif, EF-hand binding site
SMARTSM0001513870892IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.968872900IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 918 aa     Download sequence    Send to blast
MAELLVGSEI HGFHTLKDLD VANMMEEAKT RWLRPNEIHA ILCNSKYFSI NAKPVNLPKS  60
GTVVLFDRKM LRNFRKDGHN WKKKKDGKTV KEAHEHLKVG NEERIHVYYA HGEDSPTFVR  120
RCYWLLDKTL ENIVLVHYRE THEGTPATPP NSHSSSISDQ SAPLLLSEEF NSGAGHAYSA  180
GGKELQAPNE SLTVQNHEMR LHELNTLEWD DLVVTNDSND STEPRGDKFS HFDQQNHTAI  240
KGAASNGSFF PSHDSYAEVS SGGCLTSLSQ PIDRSNNTQF NNLDGVYSEL MGTQSSVSSQ  300
RNEFGEVCTG DSLDILAGDG LQSQDSFGKW MNYIMTDSPG SVDDPVLEPS ISSGHHQFTV  360
PEHLFSITDV SPAWAFSNEK TKILVTGFFH KDCLHLSKSN MFCVCGEVRV PAEFVQAGVY  420
RCFLPPHSPG LFLLYMSLDG HKPISQVLNF EYRSPQLHAP VASSEDKSKW EEFQVQMRLA  480
HLLFSSFKGL NILSSKVPPN SLKEAKKFAS KSTCISNSWA YLFKSVGDKR TSLPEAKDSF  540
FELTLKSKLK EWLLERVVEG SKTTEYDVHG QGVIHLCAML GYTWAILLFS WSGLSLDFRD  600
KYGWTALHWA AYYGREKMVV DLLSAGAKPN LVTDPTSQNP GGLNAADIAS KKGFDGLAAF  660
LSEQALVAQF NDMTLAGNIS GSLQTGSTIT VDTQNLTEDE VYLKDTLSAY RTAAEAAARI  720
QAAFREHSLK VQTKAIRFSS PEEEAQNIIA ALKIQHAFRN FEVRKKMAAA ARIQHRFRSW  780
KVRKEFLNMR RQAIKIQAAF RGFQVRKQYG KILWSVGVLE KAILRWRLKR KGFRGLQVDR  840
VEVEAVSDPN HEGDAEEDFY RASRKQAEER VERSVVRVQS MFRSKKAQEE YRRMKLAHDQ  900
AKLEYEGLLD PDMEMAD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.22121e-172fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488865.10.0calmodulin-binding transcription activator 5
RefseqXP_024036941.10.0calmodulin-binding transcription activator 5
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A067G8L60.0A0A067G8L6_CITSI; Uncharacterized protein
STRINGXP_006488865.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]