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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g001972m | ||||||||
Common Name | CISIN_1g001759mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | CAMTA | ||||||||
Protein Properties | Length: 989aa MW: 109668 Da PI: 7.6778 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 175.8 | 5.6e-55 | 20 | 136 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 +e + rwl+++ei++iL n++k++lt +++ rp+ gsl+L++rk +ryfrkDG+ w+kkkdgktv+E+hekLK g+++vl+cyYah+e+n++ orange1.1g001972m 20 QEaQYRWLRPTEICEILRNYQKFHLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEDNEN 111 55599*************************************************************************************** PP CG-1 94 fqrrcywlLeeelekivlvhylevk 118 fqrr+yw+L+ +le+ivlvhy+evk orange1.1g001972m 112 FQRRSYWMLDGQLEHIVLVHYREVK 136 **********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 81.857 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 6.9E-79 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.1E-49 | 21 | 134 | IPR005559 | CG-1 DNA-binding domain |
CDD | cd00102 | 0.00185 | 411 | 499 | No hit | No description |
Gene3D | G3DSA:2.60.40.10 | 2.9E-6 | 412 | 501 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 1.1E-6 | 412 | 497 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 2.8E-17 | 412 | 498 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 5.6E-18 | 579 | 710 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.6E-6 | 594 | 674 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 3.0E-17 | 604 | 720 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.70E-15 | 604 | 707 | No hit | No description |
PROSITE profile | PS50297 | 17.794 | 606 | 719 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 10.179 | 648 | 680 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0033 | 648 | 677 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 450 | 687 | 716 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 1.78E-8 | 814 | 873 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 7.7 | 822 | 844 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.316 | 823 | 852 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.012 | 826 | 843 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0047 | 845 | 867 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.377 | 846 | 874 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 1.6E-4 | 850 | 867 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 989 aa Download sequence Send to blast |
MAQTRRYVPN QQLDLEQILQ EAQYRWLRPT EICEILRNYQ KFHLTPDPPV RPPAGSLFLF 60 DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKAGSIDVLH CYYAHGEDNE NFQRRSYWML 120 DGQLEHIVLV HYREVKEGYK SGRSAADPGS QIESSQTSSA RSLAQANSSA PAAQTSHASI 180 PNKIDWNGQA VSSEFEDVDS GHGSGTPSVA QSIYGSMSQN ASLVAASIAG LPELSRHPQW 240 FAGSKINHGS GSSMWPQIDN SSRNATSVLD QHGHQNFYVG QPSGADFITH KLTDARLASD 300 STIANIGTCG ERLITDIDVH AVTTSSQGAS QAGIKPKEEL GELKKLDSFG RWMDQEIGGD 360 CDDSLMASDS GNYWNTLDAE NDDKEVSSLS HHMQLEMDSL GPSLSQEQLF SIRDFSPDWA 420 YSGAETKVLI IGMFLGTKKL SSDTKWGCMF GEIEVPAEVL TDNVIRCQAP SHAAGRVPFY 480 ITGSNRLACS EVREFEYREK PSKAGYPVAS KIAPEDEVRL QTRLAKFLYL DPERKWFDCT 540 IEDCNKCKLK NTIYSMRGDS EKDWGRVDES PMAIEGDCPN SRDKLIQNLL RNRLCEWLVW 600 KIHEGGKGPN VIDDGGQGVV HLAAALGYEW AMRPIIATGV SPNFRDARGR TALHWASYFG 660 REETVIMLVK LGAAPGAVED PTPAFPGGQT AADLASSRGH KGIAGYLAEA DLSSHLSSLT 720 VNENGMDNVA AALAAEKANE TAAQIGVQSD GPAAEQLSLR GSLAAVRKSA HAAALIQQAF 780 RVRSFRHRQS IQSSDDVSEV SVDLVALGSL NKVSKMIHFE DYLHFAAIKI QQKYRGWKGR 840 KDFLKIRNHI VKLQAHVRGH QVRKQYKKVV WSVSIVEKAI LRWRRRGSGL RGFRVGNSTA 900 NVASENEKTD EYEFLRIGRK QKFAGVEKAL ERVKSMVRNP EARDQYMRMV AKFENFKMCD 960 DGSGLLSQGE DSLNGPTKDN LHAYVADQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.12125 | 1e-140 | callus| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006488762.1 | 0.0 | calmodulin-binding transcription activator 3-like isoform X2 | ||||
Refseq | XP_024033866.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X2 | ||||
TrEMBL | A0A067G9C7 | 0.0 | A0A067G9C7_CITSI; Uncharacterized protein | ||||
STRING | XP_006488760.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006419272.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09410.1 | 0.0 | ethylene induced calmodulin binding protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g001972m |