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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g001759m | ||||||||
Common Name | CISIN_1g001759mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | CAMTA | ||||||||
Protein Properties | Length: 1018aa MW: 112861 Da PI: 7.439 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 175.8 | 5.9e-55 | 20 | 136 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 +e + rwl+++ei++iL n++k++lt +++ rp+ gsl+L++rk +ryfrkDG+ w+kkkdgktv+E+hekLK g+++vl+cyYah+e+n++ orange1.1g001759m 20 QEaQYRWLRPTEICEILRNYQKFHLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEDNEN 111 55599*************************************************************************************** PP CG-1 94 fqrrcywlLeeelekivlvhylevk 118 fqrr+yw+L+ +le+ivlvhy+evk orange1.1g001759m 112 FQRRSYWMLDGQLEHIVLVHYREVK 136 **********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 81.857 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 6.9E-79 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.2E-49 | 21 | 134 | IPR005559 | CG-1 DNA-binding domain |
CDD | cd00102 | 0.00191 | 440 | 528 | No hit | No description |
Pfam | PF01833 | 1.1E-6 | 441 | 526 | IPR002909 | IPT domain |
Gene3D | G3DSA:2.60.40.10 | 3.0E-6 | 441 | 530 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 2.96E-17 | 441 | 527 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 5.29E-18 | 607 | 739 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.7E-6 | 623 | 703 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.90E-15 | 633 | 736 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 3.1E-17 | 633 | 749 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 17.794 | 635 | 748 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 10.179 | 677 | 709 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0033 | 677 | 706 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 450 | 716 | 745 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 2.26E-8 | 843 | 902 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 7.7 | 851 | 873 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.316 | 852 | 881 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.012 | 855 | 872 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0047 | 874 | 896 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.377 | 875 | 903 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 1.6E-4 | 879 | 896 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1018 aa Download sequence Send to blast |
MAQTRRYVPN QQLDLEQILQ EAQYRWLRPT EICEILRNYQ KFHLTPDPPV RPPAGSLFLF 60 DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKAGSIDVLH CYYAHGEDNE NFQRRSYWML 120 DGQLEHIVLV HYREVKEGYK SGRSAADPGS QIESSQTSSA RSLAQANSSA PAAQTSHASI 180 PNKIDWNGQA VSSEFEDVDS GHGSGTPSVA QSIYGSMSQN ASLVAASIAG LPELSRHPQW 240 FAGSKINHGS GSSMWPQIDN SSRNATSVLD QHGHQNFYVG QPSGADFITH KLTDARLASD 300 STIANIGTCG ERLITDIDVH AVTTSSQGAS QVLLEHNFNL INNQCQNCPV PEVTVASVSQ 360 AGIKPKEELG ELKKLDSFGR WMDQEIGGDC DDSLMASDSG NYWNTLDAEN DDKEVSSLSH 420 HMQLEMDSLG PSLSQEQLFS IRDFSPDWAY SGAETKVLII GMFLGTKKLS SDTKWGCMFG 480 EIEVPAEVLT DNVIRCQAPS HAAGRVPFYI TGSNRLACSE VREFEYREKP SKAGYPVASK 540 IAPEDEVRLQ TRLAKFLYLD PERKWFDCTI EDCNKCKLKN TIYSMRGDSE KDWGRVDESP 600 MAIEGDCPNS RDKLIQNLLR NRLCEWLVWK IHEGGKGPNV IDDGGQGVVH LAAALGYEWA 660 MRPIIATGVS PNFRDARGRT ALHWASYFGR EETVIMLVKL GAAPGAVEDP TPAFPGGQTA 720 ADLASSRGHK GIAGYLAEAD LSSHLSSLTV NENGMDNVAA ALAAEKANET AAQIGVQSDG 780 PAAEQLSLRG SLAAVRKSAH AAALIQQAFR VRSFRHRQSI QSSDDVSEVS VDLVALGSLN 840 KVSKMIHFED YLHFAAIKIQ QKYRGWKGRK DFLKIRNHIV KLQAHVRGHQ VRKQYKKVVW 900 SVSIVEKAIL RWRRRGSGLR GFRVGNSTAN VASENEKTDE YEFLRIGRKQ KFAGVEKALE 960 RVKSMVRNPE ARDQYMRMVA KFENFKMCDD GSGLLSQGED SLNGPTKDNL HAYVADQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.12125 | 1e-140 | callus| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006488760.1 | 0.0 | calmodulin-binding transcription activator 3-like isoform X1 | ||||
Refseq | XP_006488761.1 | 0.0 | calmodulin-binding transcription activator 3-like isoform X1 | ||||
Refseq | XP_024033801.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X1 | ||||
Refseq | XP_024033834.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X1 | ||||
TrEMBL | A0A067G170 | 0.0 | A0A067G170_CITSI; Uncharacterized protein | ||||
STRING | XP_006488760.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006419272.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22300.2 | 0.0 | signal responsive 1 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g001759m |