PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g001756m
Common NameCISIN_1g001759mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CAMTA
Protein Properties Length: 1018aa    MW: 112861 Da    PI: 7.439
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g001756mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.85.9e-55201363118
               CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                        +e + rwl+++ei++iL n++k++lt +++ rp+ gsl+L++rk +ryfrkDG+ w+kkkdgktv+E+hekLK g+++vl+cyYah+e+n++
  orange1.1g001756m  20 QEaQYRWLRPTEICEILRNYQKFHLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEDNEN 111
                        55599*************************************************************************************** PP

               CG-1  94 fqrrcywlLeeelekivlvhylevk 118
                        fqrr+yw+L+ +le+ivlvhy+evk
  orange1.1g001756m 112 FQRRSYWMLDGQLEHIVLVHYREVK 136
                        **********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.85715141IPR005559CG-1 DNA-binding domain
SMARTSM010766.9E-7918136IPR005559CG-1 DNA-binding domain
PfamPF038594.2E-4921134IPR005559CG-1 DNA-binding domain
CDDcd001020.00191440528No hitNo description
PfamPF018331.1E-6441526IPR002909IPT domain
Gene3DG3DSA:2.60.40.103.0E-6441530IPR013783Immunoglobulin-like fold
SuperFamilySSF812962.96E-17441527IPR014756Immunoglobulin E-set
SuperFamilySSF484035.29E-18607739IPR020683Ankyrin repeat-containing domain
PfamPF127962.7E-6623703IPR020683Ankyrin repeat-containing domain
CDDcd002044.90E-15633736No hitNo description
Gene3DG3DSA:1.25.40.203.1E-17633749IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.794635748IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.179677709IPR002110Ankyrin repeat
SMARTSM002480.0033677706IPR002110Ankyrin repeat
SMARTSM00248450716745IPR002110Ankyrin repeat
SuperFamilySSF525402.26E-8843902IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000157.7851873IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.316852881IPR000048IQ motif, EF-hand binding site
PfamPF006120.012855872IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0047874896IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.377875903IPR000048IQ motif, EF-hand binding site
PfamPF006121.6E-4879896IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1018 aa     Download sequence    Send to blast
MAQTRRYVPN QQLDLEQILQ EAQYRWLRPT EICEILRNYQ KFHLTPDPPV RPPAGSLFLF  60
DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKAGSIDVLH CYYAHGEDNE NFQRRSYWML  120
DGQLEHIVLV HYREVKEGYK SGRSAADPGS QIESSQTSSA RSLAQANSSA PAAQTSHASI  180
PNKIDWNGQA VSSEFEDVDS GHGSGTPSVA QSIYGSMSQN ASLVAASIAG LPELSRHPQW  240
FAGSKINHGS GSSMWPQIDN SSRNATSVLD QHGHQNFYVG QPSGADFITH KLTDARLASD  300
STIANIGTCG ERLITDIDVH AVTTSSQGAS QVLLEHNFNL INNQCQNCPV PEVTVASVSQ  360
AGIKPKEELG ELKKLDSFGR WMDQEIGGDC DDSLMASDSG NYWNTLDAEN DDKEVSSLSH  420
HMQLEMDSLG PSLSQEQLFS IRDFSPDWAY SGAETKVLII GMFLGTKKLS SDTKWGCMFG  480
EIEVPAEVLT DNVIRCQAPS HAAGRVPFYI TGSNRLACSE VREFEYREKP SKAGYPVASK  540
IAPEDEVRLQ TRLAKFLYLD PERKWFDCTI EDCNKCKLKN TIYSMRGDSE KDWGRVDESP  600
MAIEGDCPNS RDKLIQNLLR NRLCEWLVWK IHEGGKGPNV IDDGGQGVVH LAAALGYEWA  660
MRPIIATGVS PNFRDARGRT ALHWASYFGR EETVIMLVKL GAAPGAVEDP TPAFPGGQTA  720
ADLASSRGHK GIAGYLAEAD LSSHLSSLTV NENGMDNVAA ALAAEKANET AAQIGVQSDG  780
PAAEQLSLRG SLAAVRKSAH AAALIQQAFR VRSFRHRQSI QSSDDVSEVS VDLVALGSLN  840
KVSKMIHFED YLHFAAIKIQ QKYRGWKGRK DFLKIRNHIV KLQAHVRGHQ VRKQYKKVVW  900
SVSIVEKAIL RWRRRGSGLR GFRVGNSTAN VASENEKTDE YEFLRIGRKQ KFAGVEKALE  960
RVKSMVRNPE ARDQYMRMVA KFENFKMCDD GSGLLSQGED SLNGPTKDNL HAYVADQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.121251e-140callus| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488760.10.0calmodulin-binding transcription activator 3-like isoform X1
RefseqXP_006488761.10.0calmodulin-binding transcription activator 3-like isoform X1
RefseqXP_024033801.10.0calmodulin-binding transcription activator 3 isoform X1
RefseqXP_024033834.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLA0A067G1700.0A0A067G170_CITSI; Uncharacterized protein
STRINGXP_006488760.10.0(Citrus sinensis)
STRINGXP_006419272.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1